Pairwise Alignments

Query, 292 a.a., sugar ABC transporter permease from Agrobacterium fabrum C58

Subject, 320 a.a., carbohydrate ABC transporter membrane protein 1, CUT1 family from Pseudomonas syringae pv. syringae B728a

 Score =  145 bits (365), Expect = 2e-39
 Identities = 94/297 (31%), Positives = 162/297 (54%), Gaps = 19/297 (6%)

Query: 5   RRKKSLIALSMVTPFIVVFATFFLYPLIEMVRISFTDAPL--IGEGNWVGFANY------ 56
           +R++   A   +TP +V       +PL+     S TDA L   G G++VG +NY      
Sbjct: 22  QRRRLRAAWLFLTPMLVCLVLVAAWPLLRTFWFSLTDADLSDTGSGSFVGLSNYLLYDGV 81

Query: 57  --TKLLSDRLFVTSLKNNGYFVLLTVVPTTVIALTIALAVSRLSGVKQTIAMSLFFLPYV 114
             + +L D  +  +++N  YF +++V    V+ L +AL ++ +    + +  +L  +P+ 
Sbjct: 82  IWSGVLVDPQWWNAVRNTLYFTVVSVGLEMVLGLMVALLLN-VKFTGRALVRALILIPWA 140

Query: 115 LPVSVVTEIWAWMLDLQFGILQPV-ISL-IAGKPVAVFKNPYWVMPMVAVVTIWWTNGFN 172
           +P  V  +IW+WML+ QFGI+  + +SL +   P+A   +    M  V +V +W T  F 
Sbjct: 141 IPTIVSAKIWSWMLNDQFGIINHMMLSLGLIDAPLAWTADADLSMWAVIIVDVWKTVPFV 200

Query: 173 VLLFIAGLRNIPTELYEAASLDGATTWQRFWRVTWPLLWPVTALVLTLQLILQLKIFDQI 232
            LL +A L+ +P++ YEAA +DG    + FWRVT PLL P   +    +++  L++FD I
Sbjct: 201 TLLMLAALQMLPSDCYEAARVDGIHPVRVFWRVTLPLLMPALLVAAIFRILDSLRVFDVI 260

Query: 233 YLLSGGGPFNSSFVLLLKVY--REAFQLNNGGYASAVSTVLFLLIVIVSILQFQLLR 287
           Y+L+     NSS  + + VY  +   +  + GY SA ST+LFL++ ++++L   L R
Sbjct: 261 YVLTS----NSSSTMSMSVYARQHLVEFQDVGYGSAASTLLFLVVAVIAMLYLYLGR 313