Pairwise Alignments

Query, 180 a.a., RNA polymerase sigma factor from Agrobacterium fabrum C58

Subject, 190 a.a., RNA polymerase sigma factor RpoE from Vibrio cholerae E7946 ATCC 55056

 Score = 60.1 bits (144), Expect = 2e-14
 Identities = 46/179 (25%), Positives = 84/179 (46%), Gaps = 12/179 (6%)

Query: 6   DAKLVADVAAGDIRAMRTLVEAKLPRIMALATRMLGDPVEAEDVAQETFLRIWKHAGTWR 65
           D  L+  V  GD +A   LV     ++  L +R + +  +  DVAQE F++ ++   T+R
Sbjct: 7   DQVLIERVQNGDKQAFNLLVLRYQNKVCNLISRYVSNSGDVADVAQEAFIKAYRAIPTFR 66

Query: 66  QGAARFDTWIHRVALNLCYDRL--RKRR---------EISVAQPSDLADARTSSENGGAD 114
            G + F TW++R+A+N   + +  + RR         E    +  D     ++ EN    
Sbjct: 67  -GESAFYTWLYRIAVNTAKNHIVAQSRRPPASDVDAEEAEFYEGGDALKELSNPENITLS 125

Query: 115 IDEGEAVGRALSLIPERQREAIILVYYQEMSNREAADIMHVSVDALESLLSRGRRALQK 173
            +  + V  A+  +P+  + A+ L     +S  E A++M   V  + S + R R A++K
Sbjct: 126 KELKKTVFDAIDALPDDLKTAMTLRELDGLSYEEIAEVMDCPVGTVRSRIFRAREAVEK 184