Pairwise Alignments

Query, 180 a.a., RNA polymerase sigma factor from Agrobacterium fabrum C58

Subject, 194 a.a., RNA polymerase subunit sigma from Vibrio cholerae E7946 ATCC 55056

 Score = 58.5 bits (140), Expect = 7e-14
 Identities = 46/173 (26%), Positives = 82/173 (47%), Gaps = 19/173 (10%)

Query: 13  VAAGDIRAMRTLVEAKLPRIMALATRMLGDPVEAEDVAQETFLRIWKHAGTWRQGAARFD 72
           V + D +A   +     P++     + +G    A ++ QET   +W+ A  +    +   
Sbjct: 21  VKSRDTQAFALVFSYYSPKLKQFVMKHVGSEQVALELVQETMSTVWQKASLFDGQKSSLA 80

Query: 73  TWIHRVALNLCYDRLR--KRREISVAQ---------PSDLADARTSSENGGADIDEGEAV 121
           TWI+ +A NL YD LR  K R+  V           P DL D     +    D+ + E V
Sbjct: 81  TWIYTIARNLSYDLLRRQKGRDAYVLADDIWPEDYCPPDLVDHYAPEQ----DLLK-EQV 135

Query: 122 GRALSLIPERQREAIILVYYQEMSNREAADIMHVSVDALESLLSRGRRALQKI 174
            + L  +PE Q++ I  VY +E+  ++ AD++ + +  ++S L   R A++K+
Sbjct: 136 MKFLDRLPEAQQQVIKAVYLEEIPQQDVADMLDIPLGTVKSRL---RLAVEKL 185