Pairwise Alignments

Query, 180 a.a., RNA polymerase sigma factor from Agrobacterium fabrum C58

Subject, 190 a.a., ECF subfamily RNA polymerase sigma-24 factor (RefSeq) from Shewanella loihica PV-4

 Score = 68.9 bits (167), Expect = 5e-17
 Identities = 48/171 (28%), Positives = 82/171 (47%), Gaps = 9/171 (5%)

Query: 6   DAKLVADVAAGDIRAMRTLVEAKLPRIMALATRMLGDPVEAEDVAQETFLRIWKHAGTWR 65
           DA LV     GD  A R L +    R+ AL  R+ G    AE+  QETF+R+W+    + 
Sbjct: 28  DAVLVQRAKQGDKTAFRQLYDQHHRRVYALCFRLAGQTELAEEATQETFVRLWQKLPLF- 86

Query: 66  QGAARFDTWIHRVALNLCYDRLRKRREISVAQPSDLADARTSSENGGADID-EGEAVGRA 124
            G ++F TW+H + +N     ++K +       S  A    S E   A ID + + V + 
Sbjct: 87  DGKSQFTTWLHSLTVNQALSCIKKHK-------SFWARFMPSEETHAAAIDFDYQGVDKL 139

Query: 125 LSLIPERQREAIILVYYQEMSNREAADIMHVSVDALESLLSRGRRALQKIL 175
           L  +PER R   +L   +   + E A  ++++    ++   R ++ LQ+++
Sbjct: 140 LLRLPERARIVFVLYALEGYQHDEIAKRLNIAPGTSKAQYHRAKKLLQEMI 190