Pairwise Alignments

Query, 292 a.a., LysR family transcriptional regulator from Agrobacterium fabrum C58

Subject, 303 a.a., DNA-binding transcriptional activator GcvA (RefSeq) from Shewanella amazonensis SB2B

 Score =  197 bits (501), Expect = 2e-55
 Identities = 115/291 (39%), Positives = 168/291 (57%), Gaps = 5/291 (1%)

Query: 1   MVRQFLPLNGLRAFEASARHLSFTRAAIELCVTQAAVSQQVKGLEKRLGVALFQRLPRGL 60
           M R+  PLN ++AFEA+ARHLSFTRAA EL VTQAAVS Q+K LE  LG+ LF+R  R L
Sbjct: 1   MSRRLPPLNAVKAFEAAARHLSFTRAAEELFVTQAAVSHQIKALEDFLGLKLFRRKNRSL 60

Query: 61  KITAEGEALLPTVTSSFDQMATTLDRIEAGQVRELLFLGVVGTFAVGWLLPRLAAFQKRH 120
            +T EG++    +   F Q++   DR+ A      L + +  +FA+ WL+PRLA F +++
Sbjct: 61  LLTEEGQSYFLDIKDIFTQLSDATDRLLARSAIGSLTVSMSPSFAIQWLVPRLAKFSEKN 120

Query: 121 PFIDVRVSTNNNRVDMAAEGLDFAIRFGQGSWHGTDAFRLFEAPLSPLCTPKLA---EML 177
           P IDVR+   ++      + +D AI +GQGSW G  A +L    L P+C+P L    + L
Sbjct: 121 PDIDVRIKAVDSEEGSLTDDVDVAIYYGQGSWPGLRADKLRNEVLIPVCSPMLLNGHKPL 180

Query: 178 KEPADLMDATLLRSYRADEWSTWFAAAGVSPAAQVNAGIVFDTSLGMMEAALQGLGVALA 237
           + PADL   TLL      +W  WF   GV+    VN G +F  S  +++AA  G GVAL 
Sbjct: 181 ETPADLKHHTLLHDMSRHDWQAWFRQCGVTD-VNVNQGPIFSHSSLVLQAAAHGQGVALG 239

Query: 238 PPSMFSRHLTSGAVMQPF-PVTISLGSYWLTRLQSKPQTSAMQAFSDWLLE 287
              +    + +G ++ PF  V +S  +Y+L   Q+  +   + AF +W+L+
Sbjct: 240 YSVLARPDIKAGRLVVPFQEVLVSKDAYYLVCQQNHAELGKIVAFREWMLD 290