Pairwise Alignments

Query, 334 a.a., sugar ABC transporter permease from Agrobacterium fabrum C58

Subject, 333 a.a., ribose ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

 Score =  211 bits (538), Expect = 2e-59
 Identities = 120/298 (40%), Positives = 174/298 (58%), Gaps = 5/298 (1%)

Query: 26  IAAFFALCMVFFSVTTDTFLTAGNLLNVVRQAAPILIVSVAMTFVIITGGIDLSVGSMVA 85
           IA  F + +V F      F T  NLLN++RQ +   I++V MT VI+T GIDLSVGS++A
Sbjct: 36  IALLFLVVVVSF--LNPNFFTVDNLLNILRQTSVNAIIAVGMTLVILTAGIDLSVGSVLA 93

Query: 86  LINAVGAILLAAGYPWPLVVVAMLVLGGGLGLVQGWFIAYQGIPAFIVTLAGLSILRGVA 145
           L  A  A L+A   P  + V   L+ G  LG + G  IA   + AFI TL  +++LRGV 
Sbjct: 94  LCGAFAATLVAMEVPVLVAVPTALLAGAALGAISGIIIAKGKVQAFIATLVTMTLLRGVT 153

Query: 146 LYITQGYSVPI---PDAPGFFYLGRGDFLGMPVPALIGVVVTVIAYIVLSSTRYGRRVVA 202
           +  T G  +       A  F + G G  LG+PVP  + VVV   A+ +L+ TR+GR V A
Sbjct: 154 MVYTDGRPISTGFTDTADTFAWFGTGYTLGIPVPVWLMVVVFAGAWYLLNHTRFGRYVYA 213

Query: 203 VGSNPEAARRVGMPAKWILASVYLAAGVASAIAGLMIAARLGSGSSNAAVGFELQVVAAV 262
           VG N  A R  G+    +   VY   G+ +A+AG+++ +RL S    A +G+EL  +AAV
Sbjct: 214 VGGNESATRLSGINVDRVKIGVYAICGLLAALAGIIVTSRLSSAQPTAGMGYELDAIAAV 273

Query: 263 VLGGTSLMGGRGTILGTVLGTMTIAVIGNGLILMHISPFFTQIVTGAIILAAIWLNTR 320
           VLGGTSLMGG+G I+GT++G + I  + N L L+ +S ++  I    +IL A+ ++ +
Sbjct: 274 VLGGTSLMGGKGRIMGTLIGALIIGFLNNALNLLDVSSYYQMIAKAVVILLAVLVDNK 331