Pairwise Alignments

Query, 334 a.a., sugar ABC transporter permease from Agrobacterium fabrum C58

Subject, 336 a.a., sugar uptake ABC transporter permease from Sinorhizobium meliloti 1021

 Score =  177 bits (448), Expect = 4e-49
 Identities = 109/302 (36%), Positives = 168/302 (55%), Gaps = 18/302 (5%)

Query: 28  AFFALCMVFFSVTTDTFLTAGNLLNVVRQAAPILIVSVAMTFVIITGGIDLSVGSMVALI 87
           A  AL ++  ++    F++  NL NV  ++A I I++V  TFVI  G +DLSVGSMVA +
Sbjct: 29  AALALLLIVGAMVNPNFISLNNLANVATRSAFIAIIAVGATFVISAGDLDLSVGSMVAFV 88

Query: 88  NAVGAILLAAGY---PWPLVVVAML---VLGGGLGLVQGWFIAYQGIPAFIVTLAGLSIL 141
            ++  + + +G    P  ++  A+L   V G   GL  G       I  FI TL  + I 
Sbjct: 89  ASLMILFMNSGVIADPALMLTAAVLFAVVAGSVCGLANGLITTVGRIEPFIATLGTMGIY 148

Query: 142 RGVALYITQGYSVPIPDA-------PGFFYLGRGDFLGMPVPALIGVVVTVIAYIVLSST 194
           RG+  +++QG ++ + +        P +F    G  LGMPVP  I + VT +A  +L  T
Sbjct: 149 RGLTTWLSQGGAITLREPELQELYRPAYF----GSILGMPVPIAIILAVTAVAAFILYRT 204

Query: 195 RYGRRVVAVGSNPEAARRVGMPAKWILASVYLAAGVASAIAGLMIAARLGSGSSNAAVGF 254
           RYGR VVAVGSN + AR  G+    +    ++  G+  A+A L+   RLGS S+   + +
Sbjct: 205 RYGRHVVAVGSNSDVARYSGIAVNRVRTIAFVIQGLCVAVAVLLYVPRLGSTSATTGILW 264

Query: 255 ELQVVAAVVLGGTSLMGGRGTILGTVLGTMTIAVIGNGLILMH-ISPFFTQIVTGAIILA 313
           ELQ + AVV+GGT+L GG G + GT+ G   + ++GN ++L + IS +    + GAII+ 
Sbjct: 265 ELQAITAVVVGGTALKGGAGRVWGTICGAFILELVGNIMLLSNFISEYLIGAMQGAIIII 324

Query: 314 AI 315
           A+
Sbjct: 325 AM 326