Pairwise Alignments

Query, 317 a.a., ABC transporter permease from Agrobacterium fabrum C58

Subject, 294 a.a., ribose ABC transporter substrate-binding protein RbsB from Vibrio cholerae E7946 ATCC 55056

 Score =  120 bits (302), Expect = 3e-32
 Identities = 83/295 (28%), Positives = 143/295 (48%), Gaps = 12/295 (4%)

Query: 16  TVLAGATLSAGL--VQAAEKTIALVQINQQALFFNQMNEGAEKAAKEAGVKLVIFNANND 73
           T+++ A LS  +  V  A+ T+A+V       FF  M +GAE  AKE G  L++ ++ ND
Sbjct: 8   TLISAALLSTSVSFVAQAQDTVAIVLSTLNNPFFVTMKDGAEAKAKELGYNLIVLDSQND 67

Query: 74  PAAQNSAIETYIQQKVDGIAVVAIDVNGIMPAVKQAAAANIPVVAIDAILPEGPQKAQIG 133
           P+ + S +E    + V  I +   D + +  A++ A  + IPV+ +D     G   + I 
Sbjct: 68  PSKELSNVEDLTVRGVKAILINPTDSDAVSNAIRIANRSKIPVLTLDRGASRGEVVSHIA 127

Query: 134 VDNGKAGADMGKFFLDYVKSDMGGKAK-IGVVGALNSFIQNIRQKGFEDTIK-DKTGITT 191
            DN   G   G F    +++ +G  AK I + G   +     R +GF + +K  K  +  
Sbjct: 128 SDNVVGGEMAGHF----IEAKIGSDAKVIQLEGIAGTSAARERGEGFMNAVKGSKMQLLA 183

Query: 192 AGVVDGQNVQDTALSAAENLITGNPDMTAIYATGEPALLGAVAAVESQSKQKDIKVFGWD 251
           +   D    +   L+  ENL+  NPD+ A++A  +   LGA+ A+  Q+  K + + G+D
Sbjct: 184 SQPADFDRTK--GLNVMENLLAANPDVQAVFAQNDEMALGALRAI--QASGKSVMIVGFD 239

Query: 252 LTKQAITGIDAGYVAGVIQQDPAEMGAAAVKALKTVADGGTVEKTIAVPVTIVTK 306
            T   I  ++ G +A  + Q P  +GA  ++    +  G  VE  I V + ++ K
Sbjct: 240 GTDDGIAAVERGQLAATVAQQPDMIGAIGIETADKMLKGEKVEAYIPVALKVIAK 294