Pairwise Alignments

Query, 317 a.a., ABC transporter permease from Agrobacterium fabrum C58

Subject, 296 a.a., substrate-binding domain-containing protein from Escherichia coli Nissle 1917

 Score =  115 bits (287), Expect = 2e-30
 Identities = 88/303 (29%), Positives = 144/303 (47%), Gaps = 25/303 (8%)

Query: 13  LAATVLAGATLSAGLVQAAEKTIALVQINQQALFFNQMNEGAEKAAKEAGVKLVIFNANN 72
           L + +L    L +    A E  I    + QQ  F+  +    ++ AK+  V L +  AN 
Sbjct: 7   LGSAMLVSLALFSQSSLAKEYKIGASLLTQQHPFYIDLANAMKEEAKKDNVNLSVSIANQ 66

Query: 73  DPAAQNSAIETYIQQKVDGIAVVAIDVNGIMPAVKQAAAANIPVVAIDAILPEGPQKAQI 132
           D   Q S +E +I +KVD I +  +D  G+  A+ +A  A IPV+ +D      P  + +
Sbjct: 67  DLNKQLSDVEDFITKKVDAIIISPVDSKGVQAAIIKADKAGIPVITVDVAAEGVPVVSHV 126

Query: 133 GVDNGKAGADMGKFFLDYVKSDMGGKAKIGVVG--ALNSFIQNIR--QKGFEDT-----I 183
             DN   G + GK     +   + GK  + ++   AL S +  +   +KG  DT     +
Sbjct: 127 ATDNYAGGVEAGKL----MGKLLHGKGTVAIISYPALQSVVARVDGFKKGLSDTPDIKIV 182

Query: 184 KDKTGITTAGVVDGQNVQDTALSAAENLITGNPDMTAIYATGEPALLGAVAAVESQSKQK 243
            ++ GIT A           AL+ A+N++  N ++  ++  G+ A L AV A +S +   
Sbjct: 183 AEQPGITRA----------EALTTAQNIMQANANLNGLFGFGDDAALAAVIAAKS-AHND 231

Query: 244 DIKVFGWDLTKQAITGIDAGYV-AGVIQQDPAEMGAAAVKALKTVADGGTVEKTIAVPVT 302
           +IK+ G+D  K+A   +D+    A VI+Q P +MGA A+ A     +G  VEK I V   
Sbjct: 232 NIKIIGFDGMKEARDAVDSEKTFAAVIRQYPDQMGAKAIDAAVDHLNGKPVEKMIPVQPG 291

Query: 303 IVT 305
           + T
Sbjct: 292 VYT 294