Pairwise Alignments

Query, 317 a.a., ABC transporter permease from Agrobacterium fabrum C58

Subject, 327 a.a., substrate-binding domain-containing protein from Escherichia coli Nissle 1917

 Score =  112 bits (281), Expect = 9e-30
 Identities = 93/316 (29%), Positives = 154/316 (48%), Gaps = 15/316 (4%)

Query: 1   MPNFKRRYFSAALAATVLAGATLSAGLVQAAEKTIALVQINQQALFFNQMNEGAEKAAKE 60
           MP    R  +  L AT+L  A  +       E TI  + ++ Q  ++  + +G + AAK+
Sbjct: 1   MPKKMTRTRNLLLMATLLGSALFARA--SDKEMTIGAIYLDTQG-YYAGVRQGVQDAAKD 57

Query: 61  AGVK--LVIFNANNDPAAQNSAIETYIQQKVDGIAVVAIDVNGIMPAVKQAAAANIPVVA 118
           + V+  L+  NA  D + +++ ++T + + VD I + A+  NG    V++A+ A IPV+ 
Sbjct: 58  SSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVIC 117

Query: 119 IDAILPE-GPQK---AQIGVDNGKAGADMGKFFLDYVKSDMGGKAKIGVVGALNSFIQNI 174
            +  + + G  K   A +  D  + G  +G    DY  ++   + KI V+      +   
Sbjct: 118 YNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCEAFEVCVQ 177

Query: 175 RQKGFEDTIKDKTGITTAGVVDGQN--VQDTALSAAENLITGNPDMTAIYATGEPALLGA 232
           R+KGFE+ +K +  +  A +V  Q   V D A+S  E LI   PD+ AI      A LGA
Sbjct: 178 RRKGFEEVLKAR--VPGAQIVANQEGTVLDKAISVGEKLIISTPDLNAIMGESGGATLGA 235

Query: 233 VAAVESQSKQKDIKVFGWDLTKQAITGIDAGYV-AGVIQQDPAEMG-AAAVKALKTVADG 290
           V AV +Q++   I VFG D+T +    ++   V   V+     +MG A   + LK +   
Sbjct: 236 VKAVRNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFTQTLKVINKQ 295

Query: 291 GTVEKTIAVPVTIVTK 306
              EK I VP+ + TK
Sbjct: 296 ADGEKVIQVPIDLYTK 311