Pairwise Alignments

Query, 654 a.a., ABC transporter permease from Agrobacterium fabrum C58

Subject, 582 a.a., lipid A export ATP-binding/permease MsbA from Vibrio cholerae E7946 ATCC 55056

 Score = 94.0 bits (232), Expect = 2e-23
 Identities = 100/409 (24%), Positives = 178/409 (43%), Gaps = 45/409 (11%)

Query: 226 VSIGGAGVTIPGFLVI----------AAVIYAAITSTSIAFIARNFVKVSEVKNQVEAEF 275
           VSI   G +I G L +            ++ A + + +I+F+++ F K+S          
Sbjct: 144 VSIVREGASIIGLLTLMFWNSWQLSLVLIVVAPVVAFAISFVSKRFRKISRNMQTAMGHV 203

Query: 276 RYTLTRVRENGESIALLGGEEEERSDLDKRFGNVRRQ-WRLMAQQYMRTTVVSNGSMLIA 334
             +  ++ +  + +   GG+E ER   DK   ++R+Q  +L++ Q +   V+        
Sbjct: 204 TSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQTMKLVSAQSIADPVIQM------ 257

Query: 335 PVVPLLLCAPKFLDGSMSLGQVMQAASAFTIVQSAFGWLVDNYPRLADWNACARRVASLM 394
            +  L L A  FL    S+   +   + FT+V SA   L+     L    +  +R  +  
Sbjct: 258 -IASLALFAVLFLASVDSIRAELTPGT-FTVVFSAMFGLMRPLKALTSVTSEFQRGMAAC 315

Query: 395 MSLDGLERAEKSDTVGRIVRGETEGETILSLKDVSVSL-GDGTAVVKETDVEIGAGERVL 453
            +L GL   E     G+       GE  + +KDV+ +  G     +      I  G+ V 
Sbjct: 316 QTLFGLMDLETERDNGKYEAERVNGE--VDVKDVTFTYQGKEKPALSHVSFSIPQGKTVA 373

Query: 454 VAGESGSGKSTLVRAISGLWPWGGGSV-------------NFRADSRLFMLPQRPYIPAG 500
           + G SGSGKST+    +  +    GS+             N R    L  + Q  ++   
Sbjct: 374 LVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFAL--VSQNVHLFND 431

Query: 501 TLRRAVCYPQPAESWTSEEIGAALDKVGLGQLKEKIEDEAPW-----DQTLSGGEKQRLT 555
           T+   + Y    E +T E+I  A  +    +  E +             +LSGG++QR+ 
Sbjct: 432 TIANNIAYAAEGE-YTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVA 490

Query: 556 FARLLLNAPDIIVMDEATAALDEKSQDKMMQTVIEEL-PDATIISVAHR 603
            AR LL    ++++DEAT+ALD +S ++ +Q  ++EL  + T++ +AHR
Sbjct: 491 IARALLRDAPVLILDEATSALDTES-ERAIQAALDELQKNKTVLVIAHR 538