Pairwise Alignments

Query, 548 a.a., peptide ABC transporter ATPase from Agrobacterium fabrum C58

Subject, 571 a.a., ABC transporter ATP-binding protein from Vibrio cholerae E7946 ATCC 55056

 Score =  427 bits (1098), Expect = e-124
 Identities = 239/557 (42%), Positives = 345/557 (61%), Gaps = 32/557 (5%)

Query: 11  VLSVRNLTVDLPRGMERSHAVKDISFDLHAGEILCIIGESGSGKSVTASTIMGLLSPVIT 70
           +L V+NL ++ P       AVK ++ D+  GEI+ ++GESG+GKS   + ++ LLSP  T
Sbjct: 3   LLEVKNLRIEYPSRHGVHAAVKSLTLDIQRGEIVGVVGESGAGKSTVGNAVIDLLSPPGT 62

Query: 71  VSSGEIQFKGMDILAAKEEKIRPLRGQAVSIIFQDPLSALNPLMTVGDQVAEVLEAHGVG 130
           ++ GE+   G  I     + +R +RG  +  IFQDP+++LNPL TV  Q+ E + A+   
Sbjct: 63  IAGGEVYLNGEKISGLSPQAMREVRGSKIGFIFQDPMTSLNPLFTVEHQLTETIHANMQV 122

Query: 131 TRETRNAKVLELLEEVGLPDPLLMRLQYPFRLSGGQRQRVMIAMALALDPDVLIADEPTT 190
           + E    + L L+++VG+P P     QYP + SGG RQRV+IA+ALA +PD++IADEPTT
Sbjct: 123 SAEEAYQRALSLMKQVGIPQPENRLKQYPHQFSGGMRQRVVIAIALAGEPDLIIADEPTT 182

Query: 191 ALDVTTQAQILELIRKIQKRKNMSVMFITHDFGVVAEIADRVVVMEKGYLVEQGRADQVL 250
           ALDV+ Q QIL LIR++ K+ N+  M +THD GVV+ + DRV VM +G LVE G   +VL
Sbjct: 183 ALDVSIQDQILNLIRELCKKNNVGCMLVTHDMGVVSNVTDRVAVMYRGDLVEFGPTAKVL 242

Query: 251 INPVHPYTQRLVAAVPRM-RSVER----SIDEEVPVV----------------------- 282
             P HPYT+ L++AVPR  R ++R    S  EE   +                       
Sbjct: 243 GTPEHPYTRSLISAVPRSDRKLDRFPLVSYIEEAKELKPLDVKSHWLGQSQDHRKYTGPL 302

Query: 283 LEVENLEKEYRSSGSFFRKART-VKAVNNVSFKLRKGQTLGVVGESGSGKSSLGRVLLKL 341
           L+VEN+   + +  S F   R  V+A NNVSF + +G+T G+VGESGSGKS++ RV+  L
Sbjct: 303 LKVENVNLRFVTKDSLFESRREYVQASNNVSFAVHEGETFGLVGESGSGKSTIARVIAGL 362

Query: 342 LDPDGGAIRFDGRDIATM-DESAFRALRPYIQMIFQDPFASLNPRHTIGKILTVGPLAHG 400
             P+ G + F+G D+  +  E   R LR  +QM+FQ+P+ S+NPR  I  I+      H 
Sbjct: 363 YQPNAGRVTFEGIDLTALKSEHERRPLRRQMQMVFQNPYTSMNPRMKIFDIIAEPIRFHK 422

Query: 401 MALHEARTKAL--GILKLVGLDEQAYDRFPHEFSGGQRQRIGIARALMFDPVVLVADEAV 458
           +   E+ T+ +   +L+ VGL + A  ++PHEFSGGQRQRI IARAL   P +L+ DE  
Sbjct: 423 LTRSESETRQIVNDLLEHVGLGKMAGLKYPHEFSGGQRQRISIARALATRPRLLICDEPT 482

Query: 459 SALDVSIQAQVLELLARVQREMKVAMIFITHDLRVASQICDDVLVMHKGTVVEQGPPTKI 518
           SALDVS+QAQ+L LL  +Q E+ + M+FI+HDL V  Q+CD V VM  GT++E  P  ++
Sbjct: 483 SALDVSVQAQILNLLKDLQDELNLTMLFISHDLPVIRQMCDRVGVMQMGTLLEVAPTEQL 542

Query: 519 FRAPTHPYTQKLVAAIP 535
           F  P H Y++KL++ +P
Sbjct: 543 FTDPQHEYSKKLISLMP 559



 Score =  189 bits (479), Expect = 3e-52
 Identities = 103/251 (41%), Positives = 160/251 (63%), Gaps = 9/251 (3%)

Query: 26  ERSHAVKDISFDLHAGEILCIIGESGSGKSVTASTIMGLLSPVITVSSGEIQFKGMDILA 85
           E   A  ++SF +H GE   ++GESGSGKS  A  I GL  P    ++G + F+G+D+ A
Sbjct: 324 EYVQASNNVSFAVHEGETFGLVGESGSGKSTIARVIAGLYQP----NAGRVTFEGIDLTA 379

Query: 86  AKEE-KIRPLRGQAVSIIFQDPLSALNPLMTVGDQVAEVLEAHGVGTRETRNAKVL-ELL 143
            K E + RPLR Q + ++FQ+P +++NP M + D +AE +  H +   E+   +++ +LL
Sbjct: 380 LKSEHERRPLRRQ-MQMVFQNPYTSMNPRMKIFDIIAEPIRFHKLTRSESETRQIVNDLL 438

Query: 144 EEVGLPDPLLMRLQYPFRLSGGQRQRVMIAMALALDPDVLIADEPTTALDVTTQAQILEL 203
           E VGL    +  L+YP   SGGQRQR+ IA ALA  P +LI DEPT+ALDV+ QAQIL L
Sbjct: 439 EHVGLGK--MAGLKYPHEFSGGQRQRISIARALATRPRLLICDEPTSALDVSVQAQILNL 496

Query: 204 IRKIQKRKNMSVMFITHDFGVVAEIADRVVVMEKGYLVEQGRADQVLINPVHPYTQRLVA 263
           ++ +Q   N++++FI+HD  V+ ++ DRV VM+ G L+E    +Q+  +P H Y+++L++
Sbjct: 497 LKDLQDELNLTMLFISHDLPVIRQMCDRVGVMQMGTLLEVAPTEQLFTDPQHEYSKKLIS 556

Query: 264 AVPRMRSVERS 274
            +P    +  S
Sbjct: 557 LMPEFTGLRES 567



 Score =  184 bits (467), Expect = 8e-51
 Identities = 106/265 (40%), Positives = 161/265 (60%), Gaps = 14/265 (5%)

Query: 282 VLEVENLEKEYRSSGSFFRKARTVKAVNNVSFKLRKGQTLGVVGESGSGKSSLGRVLLKL 341
           +LEV+NL  EY S            AV +++  +++G+ +GVVGESG+GKS++G  ++ L
Sbjct: 3   LLEVKNLRIEYPSRHGVHA------AVKSLTLDIQRGEIVGVVGESGAGKSTVGNAVIDL 56

Query: 342 LDPDG----GAIRFDGRDIATMDESAFRALR-PYIQMIFQDPFASLNPRHTIGKILTVGP 396
           L P G    G +  +G  I+ +   A R +R   I  IFQDP  SLNP  T+   LT   
Sbjct: 57  LSPPGTIAGGEVYLNGEKISGLSPQAMREVRGSKIGFIFQDPMTSLNPLFTVEHQLTETI 116

Query: 397 LAH-GMALHEARTKALGILKLVGLD--EQAYDRFPHEFSGGQRQRIGIARALMFDPVVLV 453
            A+  ++  EA  +AL ++K VG+   E    ++PH+FSGG RQR+ IA AL  +P +++
Sbjct: 117 HANMQVSAEEAYQRALSLMKQVGIPQPENRLKQYPHQFSGGMRQRVVIAIALAGEPDLII 176

Query: 454 ADEAVSALDVSIQAQVLELLARVQREMKVAMIFITHDLRVASQICDDVLVMHKGTVVEQG 513
           ADE  +ALDVSIQ Q+L L+  + ++  V  + +THD+ V S + D V VM++G +VE G
Sbjct: 177 ADEPTTALDVSIQDQILNLIRELCKKNNVGCMLVTHDMGVVSNVTDRVAVMYRGDLVEFG 236

Query: 514 PPTKIFRAPTHPYTQKLVAAIPGAD 538
           P  K+   P HPYT+ L++A+P +D
Sbjct: 237 PTAKVLGTPEHPYTRSLISAVPRSD 261