Pairwise Alignments

Query, 316 a.a., oligopeptide ABC transporter permease from Agrobacterium fabrum C58

Subject, 306 a.a., oligopeptide ABC transporter permease OppB from Vibrio cholerae E7946 ATCC 55056

 Score =  183 bits (464), Expect = 5e-51
 Identities = 101/315 (32%), Positives = 186/315 (59%), Gaps = 11/315 (3%)

Query: 1   MLTFLLHRIWQSLVLLLLVSIIGFAILNLAPGGPLSQFALTPGMTREALDRIAHQMGLDR 60
           ML F+  RI++++  +L++  I F ++  APG P S     P    E +  I  + GLD+
Sbjct: 1   MLKFIAKRIFEAIPTMLVLITISFFLMRYAPGNPFSSERPLPP---EVMANINAKYGLDK 57

Query: 61  PLPIQYLDWAWRLLQGDWGKSYR-DQRPVLDIISGHLFATLLLMVSSTVVSVLVGTWIGI 119
           P+  QYL +   ++QGD+G S++     V ++I+  L  ++ + +++ V +V++G  +G 
Sbjct: 58  PVSEQYLTYLTNIVQGDFGPSFKYKDYTVNELIASALPVSVKIGLAAFVFTVIMGVTVGT 117

Query: 120 KGAIKRYTLFDYTATVGAMIALSIPTFWFGLVAIYVFALRLKWLPAGNMYTIGDQSLYDY 179
             A+K+ T  DYT    AM+ + +P+F    V IY+FA++    PAG     G +     
Sbjct: 118 IAALKQNTWIDYTIMSTAMLGVVMPSFVLAPVLIYIFAIQFSLFPAGGWQDGGFE----- 172

Query: 180 AIHLIMPSLVLALVNIAVWSRYMRTATLDVINQDFVRTARAKGLTPRRVLMKHVVGNALL 239
             ++ +P L ++L+ +A ++R  R + ++ +N +F+RTARAKGL+   +++KH +  ALL
Sbjct: 173 --YMALPVLGMSLLYVATFARITRGSMIETLNSNFIRTARAKGLSYGYIVVKHALKPALL 230

Query: 240 PMITLAGLQLPTILGGALVTETVFTWPGMGRLFLDSLGYHDYPVVMGLLMFSAILVLFGS 299
           P+++  G     I+ G++V ET+F  PG+G+LF+++    DY +VMG+ +    L +  +
Sbjct: 231 PVVSYMGPAFVGIITGSVVIETIFGLPGIGKLFVNAAFNRDYSLVMGVTILIGFLFILFN 290

Query: 300 LLADLLVALVDPRIR 314
            + D+L+A +DP+IR
Sbjct: 291 AIVDILLAYIDPKIR 305