Pairwise Alignments

Query, 316 a.a., oligopeptide ABC transporter permease from Agrobacterium fabrum C58

Subject, 325 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

 Score =  189 bits (480), Expect = 8e-53
 Identities = 99/322 (30%), Positives = 193/322 (59%), Gaps = 9/322 (2%)

Query: 1   MLTFLLHRIWQSLVLLLLVSIIGFAILNLAPGGPLSQFALTPGMTREALDRIAHQMGLDR 60
           M +FL+ R++Q+L+++ ++S++ FAI +   G PL +  +   ++      +  ++GL+ 
Sbjct: 1   MFSFLVKRLYQALIVMFVISLVAFAIQDNL-GDPLREL-VGQSVSEAERQALRDELGLND 58

Query: 61  PLPIQYLDWAWRLLQGDWGKSYRDQRPVLDIISGHLFATLLLMVSSTVVSVLVGTWIGIK 120
           P  I+Y  +    +QGD G SY  +RP L++I   L ATL L+  +T++ ++    +G+ 
Sbjct: 59  PFIIKYSRFVTAAVQGDLGTSYFFKRPALEVIFDKLVATLELVFGATLIIIVFSIPLGVY 118

Query: 121 GAIKRYTLFDYTATVGAMIALSIPTFWFGLVAIYVFALRLKWLPA----GNMYTIGDQSL 176
            AI   +LF      G+ I +SIP F   ++ +YVF++ L WLP+      +  +G +S 
Sbjct: 119 SAIHPKSLFTKIVMAGSSIGISIPVFLTAIMLMYVFSIELGWLPSYGRGETVNLLGWESG 178

Query: 177 Y---DYAIHLIMPSLVLALVNIAVWSRYMRTATLDVINQDFVRTARAKGLTPRRVLMKHV 233
           +   D   HL++PS+ LA + + ++ R +R+  L+V++ ++++ A+AKGL   ++  +H 
Sbjct: 179 FFTLDGLRHLVLPSIALASIMLPLFIRLVRSEMLEVLSSEYIKFAQAKGLPLNKIYYQHA 238

Query: 234 VGNALLPMITLAGLQLPTILGGALVTETVFTWPGMGRLFLDSLGYHDYPVVMGLLMFSAI 293
           + N +LP++T+ G+Q+ T++   ++TETVF WPG G LFL+++   D P++   ++F  +
Sbjct: 239 LKNTMLPVLTVGGVQIGTMVAYTILTETVFQWPGTGFLFLEAINRVDTPLITAYVIFVGL 298

Query: 294 LVLFGSLLADLLVALVDPRIRL 315
           + +  + + DLL  L++P + L
Sbjct: 299 IFVVTNTIVDLLYGLINPTVNL 320