Pairwise Alignments

Query, 296 a.a., oligopeptide ABC transporter permease from Agrobacterium fabrum C58

Subject, 300 a.a., oligopeptide ABC transporter permease OppC from Vibrio cholerae E7946 ATCC 55056

 Score =  195 bits (495), Expect = 1e-54
 Identities = 99/275 (36%), Positives = 161/275 (58%), Gaps = 2/275 (0%)

Query: 18  WQNRTLRRFARHKLAVLGVIMIMIMIFACVVGPYLLPYDELFIDLRARFAPPLTGYHIFG 77
           WQ+  +R F R+K A++ + ++M++  A V  P    Y     D  A  A P +  H FG
Sbjct: 26  WQDARIR-FMRNKAAMVSLFVLMLITLAVVFLPMFSAYSYEDTDWYAMHAGP-SAEHWFG 83

Query: 78  TDPLGRDIAARLFNAGRISLLVGFFAMVLSTLIGTVIGVVAGYYGGRIGAILMRFVDAFL 137
           TD LGRD+  R    GRISL+VG    +++ LIGT+ G  +G+ GGR   ++MR ++   
Sbjct: 84  TDALGRDLFVRTLVGGRISLMVGIMGALVAVLIGTLYGAASGFIGGRTDRVMMRILEILY 143

Query: 138 SFPSIFLLLALAAFVKPSPFMITLIIAVTSWMEIARLVEAEVRSLRERDFVMAARMLGLP 197
           + P +FL++ L  F   +  +I + I   +W+++AR+V  +  SLR ++F+ AA + G+ 
Sbjct: 144 AIPFMFLVIVLVTFFGRNIVLIFVAIGAIAWLDMARIVRGQTLSLRSKEFIEAAHVCGVS 203

Query: 198 NGWIMFRELLPNAIGPIIVAATLTVARAILLEAYISFLGYGIQPPLPSWGNMLNGAQQYL 257
              I+ R ++PN +G + V +TL +   IL E+++SFLG G+Q P+ SWG +L      +
Sbjct: 204 KWNIITRHIVPNVLGIVAVYSTLLIPSMILTESFLSFLGLGVQEPMTSWGALLQEGANTM 263

Query: 258 DKAPWLAIIPGVAITLAVTSFNFIGDGLRDALDAR 292
           + A W  + P   + L +  FN++GDGLRDALD +
Sbjct: 264 EVAIWQLLFPAAFMVLTLFCFNYVGDGLRDALDPK 298