Pairwise Alignments

Query, 421 a.a., transcription termination factor Rho from Agrobacterium fabrum C58

Subject, 419 a.a., transcription termination factor Rho from Vibrio cholerae E7946 ATCC 55056

 Score =  592 bits (1526), Expect = e-174
 Identities = 292/416 (70%), Positives = 358/416 (86%)

Query: 4   MKLQELKSKSPTDLLTFAESLEVENASTMRKQELMFAILKILASQDVEIIGEGVVEVLQD 63
           M L ELK+   +DL+   ESL +EN + +RKQ+++FAILK  A    +I G+GV+E+LQD
Sbjct: 1   MNLTELKNTPVSDLVKLGESLGLENLARLRKQDIIFAILKAHAKSGEDIFGDGVLEILQD 60

Query: 64  GFGFLRSANANYLPGPDDIYISPSQIRRFSLKTGDTVEGPIRGPKEGERYFALLKVNTIN 123
           GFGFLRSA+++YL GPDDIY+SPSQIRRF+L+TGD++ G IR PKEGERYFALLKVNT+N
Sbjct: 61  GFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDSIAGKIRPPKEGERYFALLKVNTVN 120

Query: 124 FDDPEKIRHKVHFDNLTPLYPNERFKMELEVPTSKDLSSRVIDLVAPLGKGQRGLIVAPP 183
            D P+  R+K+ F+NLTPL+ NER  ME    +++D+++RV+DL AP+GKGQRGLIVAPP
Sbjct: 121 DDRPDNARNKILFENLTPLHANERMVMERGNGSTEDITARVLDLAAPIGKGQRGLIVAPP 180

Query: 184 RTGKTVLLQNIAHSITANHPECYLIVLLIDERPEEVTDMQRSVKGEVVSSTFDEPAVRHV 243
           + GKT+LLQNIA SI +NHPEC L+VLLIDERPEEVT+MQR VKGEVV+STFDEPA RHV
Sbjct: 181 KAGKTMLLQNIAQSIASNHPECVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHV 240

Query: 244 QVAEMVIEKAKRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRPKRF 303
           QVAEMVIEKAKRLVEH +DVVILLDSITRL RAYNTVVP+SGKVLTGGVDANAL RPKRF
Sbjct: 241 QVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRF 300

Query: 304 FGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSEIVLDRKVADKRIFPALDI 363
           FGAARN+EEGGSLTIIATAL+DTGS+MDEVI+EEFKGTGN E+ L+RK+A+KR+FPA+D 
Sbjct: 301 FGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNMELHLNRKIAEKRVFPAIDF 360

Query: 364 LKSGTRKEDLLVPRQDLQKIFVLRRILAPMGTMDAIEFLIDKLKQTKTNSDFFESM 419
            +SGTR+E+LL    +LQK+++LR+I+ PMG  DA+EFLIDKL  TKTN +FF++M
Sbjct: 361 NRSGTRREELLTKTDELQKMWILRKIVHPMGETDAMEFLIDKLAMTKTNDEFFDAM 416