Pairwise Alignments

Query, 340 a.a., ABC transporter, membrane spanning protein (ribose) from Agrobacterium fabrum C58

Subject, 325 a.a., Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1) from Pseudomonas fluorescens FW300-N2E2

 Score =  202 bits (515), Expect = 7e-57
 Identities = 121/313 (38%), Positives = 183/313 (58%), Gaps = 17/313 (5%)

Query: 28  GSLFALVAVFSATSNAFFTVNNGMTIALQVTSIALLGIGATCVIITGGIDLSVGSVLALA 87
           G+L A+VA+FSA S+ F + +   T+A Q+  + +L +G T ++I GGIDLSVGSVLALA
Sbjct: 25  GALLAMVALFSALSSHFLSYDTFSTLANQIPDLMVLAVGMTFILIIGGIDLSVGSVLALA 84

Query: 88  GVVAALAVKELGMPVPIGMLLGILTGSLCGLINGLLVTRFKLPPFIATLGMMLIARGVAL 147
               ++AV   G  V    LLG+   +L G + G +   +++P FI +LG++ +ARG+A 
Sbjct: 85  ASTVSVAVLGWGWSVWPSALLGMAVAALAGTVTGSITVAWRIPSFIVSLGVLEMARGLAY 144

Query: 148 QITGARAVSGLGESFGELGNGALFRIVTIGDDGFPNVVFPGIPYPVILMVVIALAVSFML 207
           Q+TG+R    +G+SF  L N   F I                P  +I ++VI +A + +L
Sbjct: 145 QMTGSRTAY-IGDSFAWLSNPIAFGIS---------------PSFIIALLVIFIAQA-VL 187

Query: 208 NRSILGRHIYAVGSNADAARLSGVNVARVTNFTYILSGTLAGLTGCVLMSRLVTAQPNEG 267
            R++ GR++  +G+N +A RL+G+N        + L G LAG+     +SRL  A PN G
Sbjct: 188 TRTVFGRYLIGIGTNEEAVRLAGINPKPYKILVFSLMGLLAGVAALFQISRLEAADPNAG 247

Query: 268 VMYELDAIASAVIGGTSLIGGVGTISGTAIGAFVIGILRNGLNMNGVSAFTQQIIIGLVI 327
              EL  IA+ VIGGTSL+GG G++  T  G  +I +L  GL   G +  T++II G VI
Sbjct: 248 SGLELQVIAAVVIGGTSLMGGRGSVISTFFGVLIISVLAAGLAQIGATEPTKRIITGAVI 307

Query: 328 LVTVWIDQLRNRR 340
           +V V +D  R++R
Sbjct: 308 VVAVVLDTYRSQR 320



 Score = 24.3 bits (51), Expect = 0.005
 Identities = 23/92 (25%), Positives = 44/92 (47%), Gaps = 6/92 (6%)

Query: 24  FAALGSLFALVAVFSATSNAFFTVNNGMTIALQVTSIALLGIGATCVIITGGIDLSVGSV 83
           F+ +G L  + A+F  +       N G  + LQV +  ++G G + +   G +  +   V
Sbjct: 221 FSLMGLLAGVAALFQISRLEAADPNAGSGLELQVIAAVVIG-GTSLMGGRGSVISTFFGV 279

Query: 84  LALAGVVAALAVKELGMPVPIGMLLGILTGSL 115
           L ++ + A LA  ++G   P      I+TG++
Sbjct: 280 LIISVLAAGLA--QIGATEPTKR---IITGAV 306