Pairwise Alignments

Query, 340 a.a., ABC transporter, membrane spanning protein (ribose) from Agrobacterium fabrum C58

Subject, 333 a.a., ribose ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

 Score =  227 bits (578), Expect = 4e-64
 Identities = 139/330 (42%), Positives = 191/330 (57%), Gaps = 26/330 (7%)

Query: 14  SDRQKDIIQKF-----AALGSLFALVAVFSATSNAFFTVNNGMTIALQVTSIALLGIGAT 68
           SD +K ++ K       +L +L  LV V S  +  FFTV+N + I  Q +  A++ +G T
Sbjct: 17  SDNRKKLLSKEWLIEQKSLIALLFLVVVVSFLNPNFFTVDNLLNILRQTSVNAIIAVGMT 76

Query: 69  CVIITGGIDLSVGSVLALAGVVAALAVKELGMPVPIGMLLGILTGSLCGLINGLLVTRFK 128
            VI+T GIDLSVGSVLAL G  AA  V  + +PV + +   +L G+  G I+G+++ + K
Sbjct: 77  LVILTAGIDLSVGSVLALCGAFAATLVA-MEVPVLVAVPTALLAGAALGAISGIIIAKGK 135

Query: 129 LPPFIATLGMMLIARGVALQITGARAVS----GLGESFGELGNGALFRIVTIGDDGFPNV 184
           +  FIATL  M + RGV +  T  R +S       ++F   G G                
Sbjct: 136 VQAFIATLVTMTLLRGVTMVYTDGRPISTGFTDTADTFAWFGTGYTL------------- 182

Query: 185 VFPGIPYPVILMVVIALAVSFMLNRSILGRHIYAVGSNADAARLSGVNVARVTNFTYILS 244
              GIP PV LMVV+     ++LN +  GR++YAVG N  A RLSG+NV RV    Y + 
Sbjct: 183 ---GIPVPVWLMVVVFAGAWYLLNHTRFGRYVYAVGGNESATRLSGINVDRVKIGVYAIC 239

Query: 245 GTLAGLTGCVLMSRLVTAQPNEGVMYELDAIASAVIGGTSLIGGVGTISGTAIGAFVIGI 304
           G LA L G ++ SRL +AQP  G+ YELDAIA+ V+GGTSL+GG G I GT IGA +IG 
Sbjct: 240 GLLAALAGIIVTSRLSSAQPTAGMGYELDAIAAVVLGGTSLMGGKGRIMGTLIGALIIGF 299

Query: 305 LRNGLNMNGVSAFTQQIIIGLVILVTVWID 334
           L N LN+  VS++ Q I   +VIL+ V +D
Sbjct: 300 LNNALNLLDVSSYYQMIAKAVVILLAVLVD 329