Pairwise Alignments

Query, 160 a.a., hypothetical protein from Agrobacterium fabrum C58

Subject, 156 a.a., 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH from Vibrio cholerae E7946 ATCC 55056

 Score = 65.5 bits (158), Expect = 4e-16
 Identities = 54/162 (33%), Positives = 76/162 (46%), Gaps = 10/162 (6%)

Query: 1   MRISIFAVGRLKSGPEKDLAARYIERLAKTGPAIGLEFSRVIEVGESRASNAETRK---R 57
           M+I + AVG       ++    Y  R     P   +E +        R  NA+  +   +
Sbjct: 1   MKIQLIAVGTKMPKWVEEGFQEYRRRFPHDMPLELVEIT-----AGKRGKNADIARILQK 55

Query: 58  EEAAMLEKHLADGAVLVLLDERGKALDSPAFASLFGDLRDSGKRDLVIAIGGADGLDSAL 117
           E  AML   +  G  +V LD  GK  D+   A      +  G RD+ I IGG +GL  A 
Sbjct: 56  EGEAMLAA-VPKGNRIVTLDIPGKRWDTEELAVQLESWKLDG-RDVSILIGGPEGLAPAC 113

Query: 118 YDKATAVLNLGKLTWPHQIVRILIAEQLYRAVTILSGHPYHR 159
              A    +L  LT PH +VR+++AE LYRA +I + HPYHR
Sbjct: 114 KAAADQSWSLSPLTLPHPLVRVVMAESLYRAWSITTNHPYHR 155