Pairwise Alignments

Query, 442 a.a., carboxy-terminal protease from Agrobacterium fabrum C58

Subject, 565 a.a., carboxy-terminal processing protease precursor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  212 bits (539), Expect = 3e-59
 Identities = 127/359 (35%), Positives = 197/359 (54%), Gaps = 16/359 (4%)

Query: 3   RKVSLLLIGGLMGATAMSVIYSASMPAQAAGPSTYKELSIFGDVFERVRAQYVTPPDDEK 62
           R+++L+L+     A   +V + +            K L  F  + + +   YV   D  K
Sbjct: 7   RRIALVLV-----AVIATVAFFSFKSGDDRNFQIAKNLDTFNAIVKELDMFYVDTIDPNK 61

Query: 63  LVENAINGMLSSLDPHSSFMNAKDANDMRTQTKGEFGGLGIEVTMENELVK--VISPMDD 120
            +   I+ ML SLDP++ +   +D +++    KG FGG+G  +T   +L +  +  P + 
Sbjct: 62  TIREGIDNMLFSLDPYTEYYPEEDQSELEQMVKGSFGGIGSLITYNTKLKRSMIAEPFEG 121

Query: 121 TPASRAGILAGDYISEIDGTPVRGLKLEQAVEKMRGAVKTPIKLTVIR---KGADKPLEF 177
           TPA++AG+ AGD + EIDG  + G    +  + +RG   T  KL V R   KG   P+EF
Sbjct: 122 TPAAKAGLKAGDILMEIDGKDLLGKNNSEVSQMLRGQAGTSFKLKVERPNEKGGQTPMEF 181

Query: 178 TVVRDVIAVRAVKSRVEGDN-VGYLRVISFTEKTYDDLEKAIKKIKADVPADKLKGYVLD 236
           T+VR+ I   A+      DN VGY+ + +F+     D +KA+     D+        V+D
Sbjct: 182 TIVRESIQTPAIPYATVMDNKVGYISLSTFSGNPSKDFKKAL----LDLKKQGATSLVID 237

Query: 237 LRLNPGGLLDQAINVSDAFLERGEV-VSTRGRNPDETRRFNATAGDLTDGKPVIVLVNGG 295
           LR N GGLLD+A+ +++ FL RG+V V+T+G+    +  +      L    P+ VLVN G
Sbjct: 238 LRNNGGGLLDEAVEIANYFLPRGKVIVTTKGKTKQASNTYKTLREPLDLDIPIAVLVNSG 297

Query: 296 SASASEIVAGALQDLRRATVVGTRSFGKGSVQTIIPLGEAGALRLTTALYYTPSGKSIQ 354
           +ASASEI++G+LQDL RA +VG R+FGKG VQ    L   G +++TT+ YY PSG+ +Q
Sbjct: 298 TASASEILSGSLQDLDRAVIVGNRTFGKGLVQVPRSLPYGGMMKVTTSKYYIPSGRCVQ 356