Pairwise Alignments

Query, 541 a.a., ABC transporter, membrane spanning protein (thiamine) from Agrobacterium fabrum C58

Subject, 260 a.a., ABC transporter permease from Methanococcus maripaludis S2

 Score = 68.9 bits (167), Expect = 2e-16
 Identities = 57/242 (23%), Positives = 115/242 (47%), Gaps = 13/242 (5%)

Query: 23  LFMALAVFALL-SFDVGASAAGVMDAYTLRILRFTLYQATLSTLLSIALGLPVALALARR 81
           LF++++   L+  FD   S+  + +   +  L+ +LY + +ST + +   +P   A++R 
Sbjct: 21  LFLSISSLILVPKFDDVLSS--IFNPEMIYSLKVSLYSSLISTGIVLGFSIPTGYAISRY 78

Query: 82  KEFPGRIWIIRLMAVPMGLPVIVGAFGIITIWGRQGVLNSALVFAGADEPFSIYGLSGIL 141
             FPG+  +  ++ +P+  P +V    ++ ++G Q  +   L F G    F+  G   I+
Sbjct: 79  S-FPGKSIVKAILDLPIAFPELVLGLALLLLFG-QTFIGDILEFFGIKVVFTKLG---IV 133

Query: 142 IAHVFFNLPLSVRLMLAGLERIPGEYWRMAASLGMGPVSVFRFIEWPAVSRLIPGIAGLV 201
           +A +F  LP ++R++ +  + I   Y  ++ SLG      F+ +  P     I   + + 
Sbjct: 134 VAQIFTALPYAIRIVCSTFQDINPRYELVSRSLGYSEFETFKNVTLPMARSGIFASSIIA 193

Query: 202 FMLCATSFTLVLLLGGGP--AATTLEVAIYQALRFDFDPQRAIALSVLQIVLTAVLLGLL 259
           F  C  +F  VL+L GG      TL + +Y  + +       +A+S   ++L    + +L
Sbjct: 194 FARCMGTFGTVLMLAGGTYMYTETLPITLYLNMSYG---NLGMAISSGIVLLMISFIAIL 250

Query: 260 AF 261
            F
Sbjct: 251 IF 252



 Score = 43.1 bits (100), Expect = 1e-08
 Identities = 39/152 (25%), Positives = 66/152 (43%), Gaps = 11/152 (7%)

Query: 378 GSSLVLLVPPVVLGSGWFLLLRVFGDVSFYAPVLVALINMLMALPLAMRVMEPAFTSHFL 437
           G +L+LL     +G     +L  FG    +  + + +  +  ALP A+R++   F     
Sbjct: 102 GLALLLLFGQTFIGD----ILEFFGIKVVFTKLGIVVAQIFTALPYAIRIVCSTFQDINP 157

Query: 438 RTGRLSASLGLQGYSRLRFADLPVLWRPMLMALSFAMALSLGDLGAVALFGSKNFV---T 494
           R   +S SLG   +   +   LP+    +  +   A A  +G  G V +     ++   T
Sbjct: 158 RYELVSRSLGYSEFETFKNVTLPMARSGIFASSIIAFARCMGTFGTVLMLAGGTYMYTET 217

Query: 495 LPWLVYSNMGSYRTNDAAGYAFLLGVVCLLLA 526
           LP  +Y NM SY      G A   G+V L+++
Sbjct: 218 LPITLYLNM-SYGN---LGMAISSGIVLLMIS 245