Pairwise Alignments

Query, 437 a.a., HlyD family secretion protein from Agrobacterium fabrum C58

Subject, 481 a.a., HlyD family type I secretion periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

 Score =  142 bits (359), Expect = 2e-38
 Identities = 112/425 (26%), Positives = 204/425 (48%), Gaps = 18/425 (4%)

Query: 17  HSAAVVV-LGLGLLVGMGGWAAFAKLAGAVVATGRVVVEGNSKKIQHLSGGIVSEINVVE 75
           HSA +++ + +   +    WA++A++    V  G+VV     + IQ+L GG+V +I V E
Sbjct: 48  HSARIILWVMVAFFILAIAWASWAEIDKVTVGQGKVVPSSQVQVIQNLEGGLVKQILVRE 107

Query: 76  GDRVAAGQILLRLSATVVQANLSIIENTLAQLYSRRARLRAEIAE---EPSFTVTEDLTA 132
           G++V  GQ L+ L  T  +++    E  +A L +   +L A I+    + +F       +
Sbjct: 108 GEQVQKGQQLILLDDTRFRSDFREREQQVANLTASVLQLSASISSVIIDENFEEKNWANS 167

Query: 133 LTSSKSAKTF----IDSEQNLFNSRRNA----LIGMKKQLATRKLQLADEARGLDVQVEA 184
           +    S   F     DS+ +L   +R+     L  ++ QL+    Q+  + + L ++ EA
Sbjct: 168 VQLDYSKLAFPPVLSDSQPDLVERQRDQYRQDLDNLRNQLSVLSQQIKQKQQDL-IEAEA 226

Query: 185 TENELA----IVKEDVSKTDELLKKGLVTLQRLNLLKRQLSNLEGQQGQYIAARAQTVGK 240
               L       K+++  T+ L  +G+V    L  L+RQL++   +              
Sbjct: 227 RIINLRQSYDYAKKELDITEPLANEGVVPKIELLKLQRQLNDTRRELTSTELKIPVLKSA 286

Query: 241 LSELDLQLLQLDEDRKSEVTKDLTSIEATVAEYEERLAATRDQLDRLDIRSPIAGRIYQL 300
           + E  L  +   +  ++E    L   +  ++   E      D+++R  + SP+ G +  L
Sbjct: 287 VREAMLSRINAAQKFRTEQQDKLNQAQDKLSSLTESAVGLEDKVNRTVVVSPVTGTVKTL 346

Query: 301 SVHNINGVIQPGEVLMLVVPDKDDLAIEANITPRDIDQIYVGQPVTVRFTAFNQSTTPDL 360
            V+ + GVIQPG  ++ +VP +D L +EA I P+DI  +    P  V+F+A++ +    L
Sbjct: 347 YVNTVGGVIQPGMNIIEIVPTEDTLLVEAQIAPQDIVFLRPDLPAIVKFSAYDFTRYGGL 406

Query: 361 SAEVAVVAPDLQTDSRTGTSYYVLRIRPNKAGMGHLPGGKLYPGMPAEVFIQTSERSVLS 420
              +  ++ D  T    G S+Y++R+R  +  +GH     + PGM A V I T +R+VL 
Sbjct: 407 EGTLEHISAD-TTQDEEGNSFYLVRVRTKETTLGHDQNLPIIPGMTASVDIITGKRTVLD 465

Query: 421 YFVKP 425
           Y +KP
Sbjct: 466 YLLKP 470