Pairwise Alignments

Query, 437 a.a., HlyD family secretion protein from Agrobacterium fabrum C58

Subject, 467 a.a., HlyD family type I secretion periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

 Score =  116 bits (291), Expect = 1e-30
 Identities = 111/416 (26%), Positives = 192/416 (46%), Gaps = 25/416 (6%)

Query: 22  VVLGLGLLVGMGGWAAFAKLAGAVVATGRVVVEGNSKKIQHLSGGIVSEINVVEGDRVAA 81
           + L LG+L  +  WA + KL     ATGR+VV G S+ IQ      +  I+V +G RV  
Sbjct: 59  LTLSLGVLAALL-WAYWGKLDVQATATGRLVVSGRSQVIQSYEQSRLLSIHVRDGQRVEK 117

Query: 82  GQILLRLSATVVQANLSIIENTLAQLYSRRARLRAEIAEEPSFTVTED--LTALTSSKSA 139
           G  LL L    V  +++ + +      +   R R  + ++    +T D   TAL + + A
Sbjct: 118 GAPLLTLDTLGVNQDITRLVSQAEFQTNELIRYRTLLNDQ---LLTHDPMFTALPAEQQA 174

Query: 140 KTFID--SEQNLFNSRRNALIGMKKQLATRKLQLADEARGLDVQVEATENELAIVKE--- 194
               +  SE+N F+S   ++    K   T +     +   L    E     LA  K+   
Sbjct: 175 LIHENYLSEKNEFDSTLASITAEMKVNRTSQAARQSDIHALLQLTENISQRLAARKKLNQ 234

Query: 195 -DVSKTDELLKKGLVTLQRLNLLKRQLSNLEGQQGQYIAARAQTVGKLSELDLQLLQLDE 253
             V    E L++    L+    + +Q + LE  + QY +   +  G  ++   + L+   
Sbjct: 235 VKVIGHVEYLEQEKELLEAQRQVAQQRAELEVLKSQYESLEERLTGFKAQKQREWLE--- 291

Query: 254 DRKSEVTKDLTSIEATVAEYEERLAATRDQLDRLDIRSPIAGRIYQLSVHNINGVIQPGE 313
            ++ +    L S+   +++  ER     +QL+   IRSP+ G + QLSV+ +  V+QP +
Sbjct: 292 -KRRQARLQLASLNQELSKVRER-----EQLEI--IRSPVDGTVQQLSVYTLGAVLQPAQ 343

Query: 314 VLMLVVPDKDDLAIEANITPRDIDQIYVGQPVTVRFTAFNQSTTPDLSAEVAVVAPDLQT 373
            LM++VP+      E  I  +D+  +Y GQ VTV+  AF  +    + AE+  ++ D  T
Sbjct: 344 NLMIIVPENRVQQAEVQILNKDVGFVYPGQSVTVKVDAFPYTRYGTIDAELLSISRDSTT 403

Query: 374 DSRTGTSYYV-LRIRPNKAGMGHLPGGKLYPGMPAEVFIQTSERSVLSYFVKPFQD 428
           D + G  +   ++++ N   M      +L PGM     I+T +R V+ Y + P Q+
Sbjct: 404 DEQLGLVFPAQIQLKTNHI-MIDGQTVELTPGMSVVAEIKTDKRRVIDYLLSPIQE 458