Pairwise Alignments

Query, 523 a.a., signal recognition particle protein from Agrobacterium fabrum C58

Subject, 440 a.a., putative signal recognition protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  415 bits (1066), Expect = e-120
 Identities = 221/443 (49%), Positives = 304/443 (68%), Gaps = 6/443 (1%)

Query: 1   MFENLQDRLGSILNGLTGRGALTEADVAAALREVRRALLEADVALEVVRSFTDRVREKAV 60
           MF+NL +RL      L G G +TE +VA  L++VR+ALL+ADV  +V ++FTD V+EKA+
Sbjct: 1   MFDNLSERLERSFKILKGEGKITEINVAETLKDVRKALLDADVNYKVAKTFTDTVKEKAI 60

Query: 61  GAAVLKSIKPGQMVVKIVHDELVEMLGTEGVSIDLHAAAPVVIMMVGLQGSGKTTTTGKI 120
           G  VL ++KP Q++VKIVHDEL +++G E V I+L +  P VI+M GLQGSGKTT +GK+
Sbjct: 61  GQNVLTAVKPSQLMVKIVHDELTQLMGGETVEINLESR-PAVILMSGLQGSGKTTFSGKL 119

Query: 121 AKRLTDRDKKKVLMASLDTRRPAAQEQLRQLGVQTGVDTLPIIAGQSPTDIAARAVQAAK 180
           A+ L  +  +K L+ + D  RPAA EQLR L  Q  V     +  ++P +IA  A+Q AK
Sbjct: 120 ARMLKTKKNRKPLLVACDVYRPAAIEQLRVLAEQIEVPMYSELDSKNPVEIAQHAIQEAK 179

Query: 181 LGGHDVVILDTAGRTHIDEPLMLEMADIKKKSNPHEILLVADSLTGQDAVNLARNFDERV 240
             G+D+VI+DTAGR  +DE +M E+  IK+  NP EIL V DS+TGQDAVN A+ F+ER+
Sbjct: 180 AKGYDLVIVDTAGRLAVDEQMMNEITAIKEAINPDEILFVVDSMTGQDAVNTAKEFNERL 239

Query: 241 GITGLVLTRMDGDGRGGAALSMRAVTGKPIKLIGIGERMNELDEFHPRRIADRILGMGDI 300
              G+VLT++DGD RGGAALS+R+V  KPIK +G GE+++ +D+FHP R+ADRILGMGDI
Sbjct: 240 DFNGVVLTKLDGDTRGGAALSIRSVVNKPIKFVGTGEKLDAIDQFHPARMADRILGMGDI 299

Query: 301 VSLVEKAAENIDAEKARSMAEKMAKGKFDLNDLADQLGQMKKMGGMGGIMGLMPGMA-GM 359
           VSLVE+A E  D E+A+ + +K+AK +FD ND   Q+ Q+KKMG +  +  ++PG+   +
Sbjct: 300 VSLVERAQEQYDEEEAKRLQKKIAKNQFDFNDFLSQIAQIKKMGNLKELASMIPGVGKAI 359

Query: 360 KDKMASAGMNDKMFDRQIAIISSMTKAERANPDILKHSRKKRIAAGSGTDAAEINKLLKM 419
           KD      ++D  F    AII SMT AER+NP+IL  SR+ RIA GSGT   E+N+LLK 
Sbjct: 360 KD----IDIDDNAFKSIEAIIYSMTPAERSNPEILNGSRRTRIAKGSGTTIQEVNRLLKQ 415

Query: 420 HRGMADMMKAMGGKGKGGIMKQM 442
                 MMK +     G +M +M
Sbjct: 416 FDQTRKMMKMVTSSKMGKMMPKM 438