Pairwise Alignments

Query, 523 a.a., signal recognition particle protein from Agrobacterium fabrum C58

Subject, 551 a.a., signal recognition particle protein from Bifidobacterium breve UCC2003

 Score =  374 bits (961), Expect = e-108
 Identities = 239/563 (42%), Positives = 334/563 (59%), Gaps = 62/563 (11%)

Query: 2   FENLQDRLGSILNGLTGRGALTEADVAAALREVRRALLEADVALEVVRSFTDRVREKAVG 61
           F +L DRL +    L  +G L+EAD+   +RE+RRALL+ADVAL+VVRSFT +VRE+A+G
Sbjct: 4   FSSLTDRLSNAFKHLKSKGKLSEADIDGTIREIRRALLDADVALDVVRSFTGKVRERALG 63

Query: 62  AAVLKSIKPGQMVVKIVHDELVEMLGTEGVSIDLHAAA--PVVIMMVGLQGSGKTTTTGK 119
             V +++ P Q VVKIV++EL ++LG +GV   L+ A   P +IM+ GLQG+GKTT  GK
Sbjct: 64  TEVSEALNPAQQVVKIVNEELTDVLG-QGVDRPLNFAKNPPTIIMLAGLQGAGKTTLAGK 122

Query: 120 IAKRLTDRDKKKVLMASLDTRRPAAQEQLRQLGVQTGVDTLPIIA--------------- 164
           +   L D     +L+A+ D +RP A  QL+ +G + GV   P+ A               
Sbjct: 123 LGYWLKDSGHTPLLVAA-DLQRPNAVTQLQVVGERAGV---PVYAPEKGVQSDGGEAVAA 178

Query: 165 -GQS---PTDIAARAVQAAKLGGHDVVILDTAGRTHIDEPLMLEMADIKKKSNPHEILLV 220
            GQ+   P  +A  +++ AK   +D VI+DTAGR  +DE LM +  DI+    P+EIL V
Sbjct: 179 PGQTSGDPVKVARDSIEIAKQKLYDTVIIDTAGRLGVDEELMKQARDIRDAVQPNEILFV 238

Query: 221 ADSLTGQDAVNLARNFDERVGITGLVLTRMDGDGRGGAALSMRAVTGKPIKLIGIGERMN 280
            D++ GQDAV  A+ FDE V  TG+VL+++DGD RGGAALS+ +VTGKPI     GE + 
Sbjct: 239 IDAMIGQDAVKTAKAFDEGVDFTGVVLSKLDGDARGGAALSVASVTGKPILFASTGEGLK 298

Query: 281 ELDEFHPRRIADRILGMGDIVSLVEKAAENIDAEKARSMAEKMAKGKFDLNDLADQLGQM 340
           + + FHP R+A RIL MGDI++L+E+A +  D EKAR  AEK+++G F L+D  DQL Q+
Sbjct: 299 DFEVFHPDRMASRILDMGDIMTLIEQAQKQFDEEKARKAAEKISEGSFGLDDFLDQLQQV 358

Query: 341 KKMGGMGGIMGLMPGMAGMKDKMASAGMNDKMFDRQIAIISSMTKAERANPDILKHSRKK 400
           +K+G M  ++G++PGMA  + ++     ++K  DR  AII SMT AER +P I+  SR+ 
Sbjct: 359 RKLGSMKSLLGMIPGMAQHRKELEQ--FDEKEIDRTEAIIRSMTPAERRDPSIINGSRRA 416

Query: 401 RIAAGSGTDAAEINKLLKMHRGMADMMKAMGGKGKGGIMKQMMGGLAGKMGLGG-MMGGG 459
           RIA GSG   +++N LL+     A MMK M  +G        MGG  G  G GG  MGGG
Sbjct: 417 RIAYGSGVTVSQVNALLQRFEQAAKMMKRMSNRGG-------MGG--GMPGFGGPAMGGG 467

Query: 460 MPDLSNI-------DPKQLEALQK--QAEAAGLGKPGAMPGMG--------GLPGGLPGL 502
                N        +P + EA +K  + + AG    G+  G           LP GL  +
Sbjct: 468 KKKGKNKKKGGKSGNPMKREAEEKALRDKLAGKKSSGSTGGSAFAKKPQNPALPAGLEEM 527

Query: 503 -----GGAKLPGL--GGMPGLPG 518
                GG +LP    GG+ GL G
Sbjct: 528 MGNVDGGTELPPNLGGGLSGLFG 550