Pairwise Alignments

Query, 853 a.a., hypothetical protein from Agrobacterium fabrum C58

Subject, 415 a.a., ABC transporter permease from Methanococcus maripaludis S2

 Score = 49.3 bits (116), Expect = 4e-10
 Identities = 66/365 (18%), Positives = 142/365 (38%), Gaps = 44/365 (12%)

Query: 18  LARREIRGGLRGFYIFLACISLGTGAIAAVNSVSRAVTSAIATEGQSILAGDVRFELRNR 77
           +A + ++      +I +  I +G  ++ A+ S    ++++++ +   +L+ ++       
Sbjct: 9   MASKMVKSSKLRSWITILGIVIGIASVIAIISAGDYLSTSVSDQLNDMLSDEITLTASAA 68

Query: 78  EATAEERS---------YLDGLGTVA---VSTGLRSMARLADGSEQTLTEVKAIDGAYPL 125
           + + ++            L+G+  +    V    R+  R A G E        I G  P 
Sbjct: 69  QGSDDDEDPELTDMDVLILNGISDIEYVDVRVSTRNEVRFAGGRETA-----TITGVDPA 123

Query: 126 FGTFVADPNRPLGELLAGSGDTYGAVAAPLLLERLGIKVG--DEILLGNAKLRLTGTVVD 183
             + + D     G LL  S      ++     E    ++G    I +GN + ++ G + +
Sbjct: 124 VWSQMTDEELSAGRLLQASDSNAVIISYYTATEAFDREIGINQMITIGNKQFKVVGILEE 183

Query: 184 EPDALSDGFG----------FAP-----RLVVSRDALFASGLIQTGSLVEHAYKIKLSDP 228
           +    + GFG          + P      L +  DA ++    + G   E  + +   D 
Sbjct: 184 DE---TQGFGQMGGMSSNTVYMPYEAVYTLELDDDASYSISEKEEGVYDEIIFTL-YEDV 239

Query: 229 AARATMTDAANKAFPQAGWSIRTSDRAAPSLT------ENVNRFSQFLTLVGLTALIVGG 282
                + +   K       +    D    S T      + ++  + FL+ +   +LIVG 
Sbjct: 240 NQTTALENIQKKLMMSRHVNEDNMDFTIRSPTVFEGPEQIISMLTTFLSFIAGISLIVGV 299

Query: 283 VGVANAVRAFLDSKRTTIASLKCLGAPASVVTMTYLFQIAFIAAVGIVIGLVVGAVAPLV 342
            G++N +   +  K   I  +K +GA    + + ++F  A I  VG  +GLV+G +   +
Sbjct: 300 TGISNTMFTTVLEKTREIGIMKAIGAKNKDIMLLFVFNSAIIGLVGGFLGLVLGTILSQI 359

Query: 343 AMRFL 347
            + F+
Sbjct: 360 IVWFI 364



 Score = 38.5 bits (88), Expect = 8e-07
 Identities = 26/132 (19%), Positives = 60/132 (45%), Gaps = 7/132 (5%)

Query: 707 SVRVKDALDVVNRLVGQLATAIRAAAAVALIASVLVLAGALAAGNRARTHDAVILKTLGG 766
           ++R     +   +++  L T +   A ++LI  V  ++  +      +T +  I+K +G 
Sbjct: 266 TIRSPTVFEGPEQIISMLTTFLSFIAGISLIVGVTGISNTMFTTVLEKTREIGIMKAIGA 325

Query: 767 TRNLLIRAFSYEYMMLGLATAVFALFAGGVSA----WFVVARIMKLPSSFLPDVAIGTLV 822
               ++  F +   ++GL      L  G + +    WF+      + SS+   ++I ++V
Sbjct: 326 KNKDIMLLFVFNSAIIGLVGGFLGLVLGTILSQIIVWFIA---QSMDSSYQFVLSIKSVV 382

Query: 823 IALVMTVGIGLI 834
           IA+  ++  G+I
Sbjct: 383 IAIGCSLAAGII 394