Pairwise Alignments

Query, 686 a.a., peptidyl-dipeptidase from Agrobacterium fabrum C58

Subject, 720 a.a., peptidyl-dipeptidase Dcp (RefSeq) from Shewanella loihica PV-4

 Score =  464 bits (1193), Expect = e-135
 Identities = 258/671 (38%), Positives = 393/671 (58%), Gaps = 23/671 (3%)

Query: 21  PKFDAVKDEDFAPAFDAALFSHEQEIDAIAGNPEAPSFENTVTALEIAGDELSRISSLFW 80
           P+FD +  +D+APAF   +  H++EI AI  N  A  F+NT+ A+E +G  L+R++  F+
Sbjct: 65  PEFDKITFDDYAPAFTQGIIEHDKEIQAIIDNQAAADFDNTIVAMEKSGSLLTRVAKTFF 124

Query: 81  NKAGANTNGVIQALEREIAPKMSRHYSKIGMNEALFKRIDTLWEKREALGLTGEEKRVLE 140
           N A  N+N  +Q LE E+APK+S H+  I +N  LF R++++++ R++L  + E+K ++E
Sbjct: 125 NLASVNSNSQVQTLEAELAPKLSAHWDNIFLNPELFARVESVYKSRDSL--SAEDKHLVE 182

Query: 141 RHWKGFVHSGAKLPKERQERLAAINEELAGLGAKFGQNVLADEKSWKLLLSTDEELAGIP 200
            ++  F  +GAKL    +E++  +N +LA L  +F +NVL   K+  +++    EL G+ 
Sbjct: 183 YYYLAFERAGAKLSDADKEKMRDLNGQLASLTTEFSKNVLDSFKNEVIIVKDKAELDGLS 242

Query: 201 GFLRDAMAGAAGEHGEDGKFAVTLSRSIIEPFLTFSERRDLREQAFKAWVARGENGGETD 260
                 +A AA + G++G + +TL  +  +P L+    R+LRE   K W          +
Sbjct: 243 DAEIATLAQAAKDAGKEG-YLITLVNTTRQPILSSLNNRELRE---KVWKTSANRAMALN 298

Query: 261 NREIVRRTLELREEKAKLLGYANFAAYKLDDTMAKTPDAVNGLLRQVWEKAVQRAGEEEA 320
              IV+++  L  EKA LLGY ++AAY + D MAKTP AV  +L  +  KAV +A  E A
Sbjct: 299 GPNIVKQS-HLHAEKAALLGYDSWAAYTVADQMAKTPTAVYEILDDLAPKAVAKAKLEAA 357

Query: 321 GLAAIIAEEGKNHEVLPWDWRHYAEKLRAQKFNFSEAELKPYLQLEKII-EACFDVAERL 379
            + A I   G++ E+ PWDW +Y+EK+R  K++  ++++ PY +  +++ +  F   E+L
Sbjct: 358 DIQAQIKASGQDFELAPWDWAYYSEKVRKAKYDLDQSQVTPYFEFNRVLNDGLFFAMEKL 417

Query: 380 FGIHAVEVKGVVGYHPDVRIFEIRDNKGDLKAMFLGDYFARPSKRSGAWMSSFQSQHKLP 439
           +GI     K +  ++PDV  +EI +       +F  D +AR  K  GAWM  F +Q    
Sbjct: 418 YGITVKPRKDLPVWNPDVLAYEIFNKDKSSIGIFYLDPYAREGKNGGAWMDEFVTQ---- 473

Query: 440 LKDGTVGEIPIIYNVCNFAKPAEGKPALLSLDDARTLFHEFGHALHGMLSDVTYPSVSGT 499
              G +G  P++YN  N  KPA G P L++ D+  T+FHEFGHA+HG+ S V YPSV+GT
Sbjct: 474 --SGLLGTKPVVYNALNIPKPASG-PTLMTYDEVSTMFHEFGHAVHGLFSQVKYPSVAGT 530

Query: 500 GVSRDFVELPSQLYEHWLTVPEILEKYALHYETGAPMPKALLDKVLAAQTFNAGFNTVEF 559
              RDFVE PSQ  E W   PE+L  YA HY+TG P+P  LL KVLAA  F  GF+T E+
Sbjct: 531 ATPRDFVEFPSQANEDWSIDPEVLANYAKHYQTGEPIPAELLKKVLAASKFGQGFDTTEY 590

Query: 560 TSSAIVDMAFHT--RDSVADPMA---VQGEVLSGLNMPKSIVMRHATPHFQHVFSGDGYS 614
            ++AI+DM +H+   D+  D +A    Q     G++    I  R+ + +F H F+G GYS
Sbjct: 591 LAAAILDMEWHSIGVDAKIDDVAKFEQQALAKHGIDF-APIPPRYKSAYFSHAFAG-GYS 648

Query: 615 AGYYSYMWSEVLDADAFAAFEETGNAFDGEMARRLKDNIYSVGGSIDPEEAYLAFRGKMP 674
           AGYY+Y+W+EV  ADAF      G     E   + +DN+ S G S D  + Y+ F G+ P
Sbjct: 649 AGYYAYLWTEVFAADAFDFMSHNG-GLSLENGNKFRDNVLSKGNSEDLMQDYIKFTGRKP 707

Query: 675 SPDAMLLKRGL 685
           + DA+L  RGL
Sbjct: 708 TVDALLKHRGL 718