Pairwise Alignments

Query, 315 a.a., site-specific recombinase from Agrobacterium fabrum C58

Subject, 302 a.a., site-specific tyrosine recombinase XerD from Vibrio cholerae E7946 ATCC 55056

 Score =  136 bits (342), Expect = 7e-37
 Identities = 95/299 (31%), Positives = 159/299 (53%), Gaps = 13/299 (4%)

Query: 21  QSWLATLAGERRLADNTVEAYERDTRQFLRFLTGYIGRPAAIRDIADLRPVDLRAFLANR 80
           + +L T+  ER LA+NTV +Y  D  + L ++     R   I   A L+  + +++L+ +
Sbjct: 13  EQFLDTMWFERGLAENTVASYRNDLSKLLEWMAQNQYRLDFI-SFAGLQ--EYQSWLSEQ 69

Query: 81  RKEGAGARSLGRHLAGLRSLLHHLQKKGLVNAAGATAMRAPKQPKSLPKPLTDRQALKIT 140
             +     S  R L+ +R L  +L ++ +     +  + +PK P  LPK L++ Q   + 
Sbjct: 70  NYKPT---SKARMLSAIRRLFQYLHREKVRADDPSALLVSPKLPTRLPKDLSEAQVEALL 126

Query: 141 TAEAQLNEEPWIAARNAAVLSLLYGCGLRISEALGLTPADFPPGTRSLRITGKGNKTRIV 200
           +A    + +  +  R+ A+L LLY  GLR++E + LT  +       +R+ GKG K R+V
Sbjct: 127 SAP---DPQSPLELRDKAMLELLYATGLRVTELVSLTMENMSLRQGVVRVMGKGGKERLV 183

Query: 201 PLLAVVTEAVDTYRKLCPYALAADEP---MFLGARGGKLQPAIIQREMQKLRGAFGLP-E 256
           P+     E ++T+ +     L  ++    +F  +RG ++        ++      G+  E
Sbjct: 184 PMGENAIEWIETFLQQGRSLLLGEQTSDIVFPSSRGQQMTRQTFWHRIKHYAVIAGIDVE 243

Query: 257 NATPHALRHSFATHLLAGGGDLRTIQELLGHASLSTTQVYTGVDTARLLEIYDNAHPRA 315
             +PH LRH+FATHLL  G DLR +Q LLGH+ LSTTQ+YT V T RL ++++  HPRA
Sbjct: 244 KLSPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHNEHHPRA 302