Pairwise Alignments

Query, 308 a.a., transcriptional regulator, ROK family from Agrobacterium fabrum C58

Subject, 335 a.a., putative ROK-family protein (RefSeq) from Shewanella amazonensis SB2B

 Score =  145 bits (367), Expect = 1e-39
 Identities = 108/315 (34%), Positives = 157/315 (49%), Gaps = 23/315 (7%)

Query: 6   DIGGTTIKGAIAHTPDDIRPVPR--IPTPKTSFEDFAAGLKSVIDA--------SGGT-- 53
           DIGGT I  A+A   D +  V R  IPTP   +  F   + + I+         SG T  
Sbjct: 6   DIGGTKI--ALALFDDSMACVERWQIPTPVADYGQFLDEVCAQIERADELAQQHSGVTVQ 63

Query: 54  -----PGCVSLSIAGVIDPDTGKATVANIPSIHGRVLKDELEKALNLPVIVSNDADCFVI 108
                 G V +++ GVI  D G    +N+P ++GR +  EL   L  PV + ND  CF +
Sbjct: 64  PAEVSKGSVGIALPGVILSD-GTVLSSNVPCLNGRTVAQELTVRLGRPVALGNDCRCFAL 122

Query: 109 AESEIGSGQGHRVVFGVILGTGVGGGLVIDGKLINSHGGFAGEWGHGPVAATSAGNPPVS 168
           +E  +G+G G   V GVILGTG+GGG+ I  KLI      AGE+GH  +   ++      
Sbjct: 123 SEVLLGAGVGFERVLGVILGTGLGGGVCISQKLILGAHCLAGEFGH--IGLPASVIIKHQ 180

Query: 169 LPRFECGCGLTGCVDAIGSARGMEKLHAHLHRQEMTSEDIIAAWQAGDAKAARTIDVLID 228
           LP FECGCGLTGC +   S  G+ +L+ H      T    +A +++G A+A  T D  +D
Sbjct: 181 LPLFECGCGLTGCAETYVSGTGLGRLYQHFGGTADTYV-WLADYRSGKAEAISTFDAYMD 239

Query: 229 ILASPLAMVINVTGATIVPVGGGLSNSRELLAALDEAVRGRILRRFNRPLVVPAICRIEP 288
            L S LA  I       +  GGG+S  +E++AAL +A    +      P    A      
Sbjct: 240 ALGSVLAGQILSLDPDCLVFGGGISEVKEIIAALPDATARHLFASAKLPEFRVAEFGAAS 299

Query: 289 GLIGSAVIGLKYAQE 303
           G+ G+A++G   +++
Sbjct: 300 GVRGAALLGKALSED 314