Pairwise Alignments

Query, 308 a.a., transcriptional regulator, ROK family from Agrobacterium fabrum C58

Subject, 306 a.a., ROK family protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  125 bits (314), Expect = 1e-33
 Identities = 95/306 (31%), Positives = 143/306 (46%), Gaps = 28/306 (9%)

Query: 6   DIGGTTIKGAIAHTPDDIRPVPRIPTPKTSFEDFAAGLKSVID------ASGGTPGCVSL 59
           D+GGT I+    +   +     RI TP+    D+   L +++D      ++ G  G V +
Sbjct: 7   DLGGTKIELVALNNEGNEVVRKRINTPR----DYQGTLNAIVDLVNEAESTLGEKGSVGV 62

Query: 60  SIAGVIDPDTGKATVANIPSIHGRVLKDELEKALNLPVIVSNDADCFVIAESEIGSGQGH 119
            I GVI P +G    AN   I+G  L   L + L   V V+NDA+CF ++E+  G+  G 
Sbjct: 63  GIPGVISPYSGLVKNANSTWINGHPLDVHLGELLGREVRVANDANCFALSEAVDGAAAGK 122

Query: 120 RVVFGVILGTGVGGGLVIDGKLINSHGGFAGEWGHGPVAATSAGNPPVSLPRF---ECGC 176
            VVFGVI+GTG G G+ I+GK+     G  GEWGH P+       P ++   F    C C
Sbjct: 123 SVVFGVIIGTGCGAGVAINGKVHAGGNGIGGEWGHNPL-------PWMTKEEFNTTRCFC 175

Query: 177 GLTGCVDAIGSARGM-----EKLHAHLHRQEM---TSEDIIAAWQAGDAKAARTIDVLID 228
           G   C++   S  G      E L      Q +   +  +I++    GD  A    +  +D
Sbjct: 176 GNPDCIETFISGTGFVRDYNEALSRAASVQRVPAKSGSEIMSLVDGGDEIALAAFERYVD 235

Query: 229 ILASPLAMVINVTGATIVPVGGGLSNSRELLAALDEAVRGRILRRFNRPLVVPAICRIEP 288
            LA  LA VIN+     + +GGG+SN   +   L   +   ++ R  R  VV  +     
Sbjct: 236 RLARSLAHVINLLDPDAIVLGGGMSNVEAIYPRLPALLSHYVVGRECRTPVVQNLYGCSS 295

Query: 289 GLIGSA 294
           G+ G+A
Sbjct: 296 GVRGAA 301