Pairwise Alignments

Query, 285 a.a., ABC transporter, membrane spanning protein (maltose) from Agrobacterium fabrum C58

Subject, 280 a.a., carbohydrate ABC transporter permease from Rahnella sp. WP5

 Score =  172 bits (435), Expect = 1e-47
 Identities = 88/273 (32%), Positives = 151/273 (55%), Gaps = 2/273 (0%)

Query: 13  WYEMVGIYCGIAVFLAFVLAPFVEGFLVSLKPLSLLFSSPYRFWPENGSFEAYRTMWVSV 72
           W    G   GI  +L F L P      +S+ P  LL+S   R WP   +   ++ ++   
Sbjct: 9   WLRKGGHRLGILFYLVFALFPIYWLIKISVTPDKLLYSEGVRMWPGEMTLTHFQRVFTES 68

Query: 73  PGFALYIFNSFFIAGSITLIVLVLVIPASYAFARFEFRGAGLLLGIFLAVKMFSGAVLLI 132
             F LY FNS  ++     +  ++   A +AF+RF FRG  ++  + L  +MF   ++L 
Sbjct: 69  Q-FPLYFFNSLIVSFGTAFLTTIIAAGAGFAFSRFSFRGKTVMAALLLFTQMFPLVMILA 127

Query: 133 PLFRLMRSIGVLNTYFAMIIPGVAFIIPTGILLLVTYMRRIPRELEEAAYVDGASRLYTL 192
           P++++M  +G+ N+   +++   AF +P    L+ ++   IP++LEE+A ++G SR   L
Sbjct: 128 PIYKVMAPLGLTNSLLGLVLIYTAFNVPFATFLMQSFFDSIPKDLEESAMLEGCSRFMAL 187

Query: 193 RRVVLPIATPGIAVVAISSFIEAYAQQFIYALTFNSKTEYMPLPVGLFAYFGRQEVVWNE 252
           R+V++P+  PG+A      F  A++ + +++L   +K E M  PVGL ++  +  V W +
Sbjct: 188 RKVIIPLTLPGMAATLGFVFTAAWS-ELLFSLMLINKNEVMTFPVGLLSFVSKFAVSWGD 246

Query: 253 LMAASFVGIAPAMIAIFLMQRYLVGGLTAGAVK 285
           +MAA+ + + PA +    +QRYLV GLTAGAVK
Sbjct: 247 MMAAAVLALIPACLFFAFIQRYLVQGLTAGAVK 279