Pairwise Alignments

Query, 391 a.a., ABC transporter, membrane spanning protein (oligopeptide) from Agrobacterium fabrum C58

Subject, 300 a.a., oligopeptide ABC transporter permease OppC from Vibrio cholerae E7946 ATCC 55056

 Score =  166 bits (419), Expect = 1e-45
 Identities = 89/222 (40%), Positives = 138/222 (62%), Gaps = 7/222 (3%)

Query: 168 GTDRLGRDVLSRIIYGARISLTIGLLGVAMSFVLGIVIGGLAGYRGGTFDLIVQRIIEVL 227
           GTD LGRD+  R + G RISL +G++G  ++ ++G + G  +G+ GG  D ++ RI+E+L
Sbjct: 83  GTDALGRDLFVRTLVGGRISLMVGIMGALVAVLIGTLYGAASGFIGGRTDRVMMRILEIL 142

Query: 228 QSIPSIPLWLALAAIMPVTWSPILVYLGITIILGMLDWTGLARAVRSKLLALREEDYVLS 287
            +IP + L + L     VT+    + L I + +G + W  +AR VR + L+LR ++++ +
Sbjct: 143 YAIPFMFLVIVL-----VTFFGRNIVL-IFVAIGAIAWLDMARIVRGQTLSLRSKEFIEA 196

Query: 288 AQLMGAGTPRIIGRHLIPGFMSHLIASATLTIPGMILGETALSFLGLGLRPPITSWGILL 347
           A + G     II RH++P  +  +   +TL IP MIL E+ LSFLGLG++ P+TSWG LL
Sbjct: 197 AHVCGVSKWNIITRHIVPNVLGIVAVYSTLLIPSMILTESFLSFLGLGVQEPMTSWGALL 256

Query: 348 TEARSVSVIALYPWLLIPTIPVVLVILAFNFFGDGLRDAADP 389
            E  +   +A++  LL P   +VL +  FN+ GDGLRDA DP
Sbjct: 257 QEGANTMEVAIWQ-LLFPAAFMVLTLFCFNYVGDGLRDALDP 297