Pairwise Alignments

Query, 391 a.a., ABC transporter, membrane spanning protein (oligopeptide) from Agrobacterium fabrum C58

Subject, 312 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

 Score =  157 bits (396), Expect = 5e-43
 Identities = 89/234 (38%), Positives = 138/234 (58%), Gaps = 6/234 (2%)

Query: 161 GGEMFLLGTDRLGRDVLSRIIYGARISLTIGLLGVAMSFVLGIVIGGLAGYRGGTFDLIV 220
           G E FLLGTD  GRD+ S I+YG+R+SLTIG L V +   LGIVIG  AGY GG  D  +
Sbjct: 75  GNEHFLLGTDEQGRDIFSTILYGSRLSLTIGFLAVGLQLTLGIVIGLSAGYFGGRIDSFL 134

Query: 221 QRIIEVLQSIPSIPLWLALAAIMPVT-----WSPILVYLGITIILGMLDWTGLARAVRSK 275
            R  ++  S  ++ + + ++AI   +     +S   V + + +I+G+ +W   AR VR+ 
Sbjct: 135 MRFADIQLSFSTMMVAIIVSAIFKASFGGEFFSQYAVVM-LVVIIGVAEWPQYARTVRAS 193

Query: 276 LLALREEDYVLSAQLMGAGTPRIIGRHLIPGFMSHLIASATLTIPGMILGETALSFLGLG 335
           +LA ++++YV +A++MG   PRI+ RH++P  +S ++  +T+ +   I+ E ALSFLGLG
Sbjct: 194 VLAEKKKEYVEAARVMGFKAPRIMFRHILPNCLSPILVISTVQVANAIMSEAALSFLGLG 253

Query: 336 LRPPITSWGILLTEARSVSVIALYPWLLIPTIPVVLVILAFNFFGDGLRDAADP 389
           L     S G L++   +      +     P I +VL++L  N  GD LRD  +P
Sbjct: 254 LPVDQPSLGSLISIGFTYIFSGAWWITAFPGIVLVLLVLVINLLGDWLRDVFNP 307