Pairwise Alignments

Query, 332 a.a., ABC transporter, membrane spanning protein (oligopeptide) from Agrobacterium fabrum C58

Subject, 352 a.a., Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1) from Pseudomonas fluorescens FW300-N2E2

 Score =  135 bits (341), Expect = 1e-36
 Identities = 100/355 (28%), Positives = 178/355 (50%), Gaps = 29/355 (8%)

Query: 1   MLRYIIKRILVMIPTLILISMLVFTIIELPPGDYFESYVAELRAMGETA----------- 49
           M  YI +R+L++IPTL++I ++ F I++  PG   E  +A L+ +G  +           
Sbjct: 1   MWAYIARRLLLIIPTLVIILLVNFVIVQAAPGGPVEQAIAHLQGIGGASVGGSSNTMTNS 60

Query: 50  -------NLAEIEELRTRYGFDQPAPIRYFRWATGMLVGDFGYSFEYQLPVSDVVGDRLW 102
                  +   I+++  +YGFD+PA  R +   +     DFG SF     V+D++ +++ 
Sbjct: 61  SRASRGLDPQLIKDIEKQYGFDKPAHERLWLMLSSYARLDFGKSFFRGATVTDLILEKMP 120

Query: 103 LTVLVSFVTIIVTWILAFPIGIYSATHKYSWGDYGLTFLGLLGIAIPNFMLAL-ILMYFA 161
           +T+ +     ++T++++ P+GI  A H  S  D   +   ++G A+P F+ A+ +++ FA
Sbjct: 121 VTISLGLWATLITYLVSIPLGIRKAVHHGSAFDVWSSTAIIIGYAMPAFLFAMFLIVVFA 180

Query: 162 N----IWFGISIGHLMDREYLNQAMSWAKFKSILEHIWIPVLIIGTAGTAGMIRRLRANL 217
                 WF +  G + D        +  K      H+ +PV  +   G A +    + + 
Sbjct: 181 GGTSLNWFPVR-GLVSDN--FESLSTLGKIADYFWHLVLPVTSLVIGGFATLTILTKNSF 237

Query: 218 LDELQKQYVVTARAKGLHPFKVLIKYPLRMALNFFISDI-GSILPAIISGAEITAVVLSL 276
           L+E+ +QYVVTARAKG+   +VL  +  R A+   +S I  + +    +G+ +  V+ SL
Sbjct: 238 LNEITRQYVVTARAKGMSERRVLYGHVFRNAMLLVVSGIPQAFISVFFAGSLLIEVIFSL 297

Query: 277 ETTGPMLIRALQSQDM-YLAGSFLMFLAFLTVIGVLVSDIALAILDPRIRFGGGN 330
           +  G M   A  S+D   + GS  +F  F  +I  LV D+   ++DPRI F   N
Sbjct: 298 DGLGRMSYEAAVSRDYPVVFGSLFIFTLFGLLI-KLVGDLCYTLVDPRIDFAARN 351