Pairwise Alignments

Query, 332 a.a., ABC transporter, membrane spanning protein (oligopeptide) from Agrobacterium fabrum C58

Subject, 360 a.a., peptide ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

 Score =  142 bits (357), Expect = 2e-38
 Identities = 107/367 (29%), Positives = 183/367 (49%), Gaps = 51/367 (13%)

Query: 1   MLRYIIKRILVMIPTLILISMLVFTIIELPPGDYFESYVAELRAMGETANLAE------- 53
           ML YI++R+L+++PTL  I  + F II++ PG   E  +A+L   G T+ + E       
Sbjct: 1   MLSYILRRLLLVVPTLWAIITINFFIIQIAPGGPVEQAIAQLE--GNTSGVMERFTGGGQ 58

Query: 54  -----------------------IEELRTRYGFDQPAPIRYFRWATGMLVGDFGYSFEYQ 90
                                  +EE+  R+GFD+P   RYF+        +FG S    
Sbjct: 59  EVAAPTDAPVSGYKGSRGLDPQVVEEITRRFGFDKPIHERYFQMLKDYATFNFGESLFRG 118

Query: 91  LPVSDVVGDRLWLTVLVSFVTIIVTWILAFPIGIYSATHKYSWGDYGLTFLGLLGIAIPN 150
             V D++ +RL +++ +   + ++ ++++ P+GI  A H  S  D   + + ++G AIP 
Sbjct: 119 GDVIDLIVERLPVSISLGLWSTLLIYLISIPLGISKAIHHGSRFDVWSSAVVIIGYAIPG 178

Query: 151 FMLALILM-------YFANIWFGISIGHLMDREYLNQAMSWAKFKSILEHIW---IPVLI 200
           F+ A+IL+       YF+  WF +  G + D      ++ W  ++ +L++ W   +P L 
Sbjct: 179 FLFAIILIILFASGNYFS--WFPLR-GLVSDN---FASLPW--YQQVLDYFWHLTLPTLA 230

Query: 201 IGTAGTAGMIRRLRANLLDELQKQYVVTARAKGLHPFKVLIKYPLRMALNFFISDIGSIL 260
           +   G A +    + + LDE+ KQYVVTARAKGL   ++L K+  R A+   I+   S  
Sbjct: 231 MVIGGFATLSMLTKNSFLDEINKQYVVTARAKGLDERRILYKHVFRNAMLIIIAGFPSAF 290

Query: 261 PAI-ISGAEITAVVLSLETTGPMLIRALQSQDMYLAGSFLMFLAFLTVIGVLVSDIALAI 319
            +I  +G+ +  V+ SLE  G +   A   +D  L  S L  +  L ++  ++SD+    
Sbjct: 291 ISIFFTGSMLIEVMFSLEGIGLLGFEATIQRDYPLVFSSLYIMTLLGLLLSIISDLTYMW 350

Query: 320 LDPRIRF 326
           +DPRI F
Sbjct: 351 VDPRIDF 357