Pairwise Alignments

Query, 332 a.a., ABC transporter, membrane spanning protein (oligopeptide) from Agrobacterium fabrum C58

Subject, 306 a.a., oligopeptide ABC transporter permease OppB from Vibrio cholerae E7946 ATCC 55056

 Score =  142 bits (357), Expect = 1e-38
 Identities = 91/328 (27%), Positives = 165/328 (50%), Gaps = 24/328 (7%)

Query: 1   MLRYIIKRILVMIPTLILISMLVFTIIELPPGDYFESYVAELRAMGETANLAEI-EELRT 59
           ML++I KRI   IPT++++  + F ++   PG+ F S         E     E+   +  
Sbjct: 1   MLKFIAKRIFEAIPTMLVLITISFFLMRYAPGNPFSS---------ERPLPPEVMANINA 51

Query: 60  RYGFDQPAPIRYFRWATGMLVGDFGYSFEYQ-LPVSDVVGDRLWLTVLVSFVTIIVTWIL 118
           +YG D+P   +Y  + T ++ GDFG SF+Y+   V++++   L ++V +     + T I+
Sbjct: 52  KYGLDKPVSEQYLTYLTNIVQGDFGPSFKYKDYTVNELIASALPVSVKIGLAAFVFTVIM 111

Query: 119 AFPIGIYSATHKYSWGDYGLTFLGLLGIAIPNFMLALILMYFANIWFGISIGHLMDREYL 178
              +G  +A  + +W DY +    +LG+ +P+F+LA +L+Y   I F            L
Sbjct: 112 GVTVGTIAALKQNTWIDYTIMSTAMLGVVMPSFVLAPVLIYIFAIQFS-----------L 160

Query: 179 NQAMSWAKFKSILEHIWIPVLIIGTAGTAGMIRRLRANLLDELQKQYVVTARAKGLHPFK 238
             A  W       E++ +PVL +     A   R  R ++++ L   ++ TARAKGL    
Sbjct: 161 FPAGGWQD--GGFEYMALPVLGMSLLYVATFARITRGSMIETLNSNFIRTARAKGLSYGY 218

Query: 239 VLIKYPLRMALNFFISDIGSILPAIISGAEITAVVLSLETTGPMLIRALQSQDMYLAGSF 298
           +++K+ L+ AL   +S +G     II+G+ +   +  L   G + + A  ++D  L    
Sbjct: 219 IVVKHALKPALLPVVSYMGPAFVGIITGSVVIETIFGLPGIGKLFVNAAFNRDYSLVMGV 278

Query: 299 LMFLAFLTVIGVLVSDIALAILDPRIRF 326
            + + FL ++   + DI LA +DP+IR+
Sbjct: 279 TILIGFLFILFNAIVDILLAYIDPKIRY 306