Pairwise Alignments

Query, 630 a.a., ABC transporter, nucleotide binding/ATPase protein (oligopeptide) from Agrobacterium fabrum C58

Subject, 530 a.a., ABC transporter ATP-binding protein from Vibrio cholerae E7946 ATCC 55056

 Score =  406 bits (1044), Expect = e-117
 Identities = 245/562 (43%), Positives = 327/562 (58%), Gaps = 43/562 (7%)

Query: 7   LLRIENLRVSFSLMGGTIDAVRDTSLRILPGKVTALVGESGSGKSVIGQTIMGIHPKTAR 66
           +L+I+NL V F + G         SL I  G+  ALVGESGSGKSV    I+ + PK + 
Sbjct: 5   VLKIDNLSVGFGIAGQARPVTEGVSLTIARGETLALVGESGSGKSVTANAILRLLPKGSA 64

Query: 67  --VNGRVLFTDPENAAAGPIDLLQLPKDGREIRSIRGNRIGLIFQEPMTSFSPLHTIGNQ 124
             ++G + F        G +D L+  +  R +R IRG RIG+IFQEPM S +PLH IG Q
Sbjct: 65  HYLSGSIHF--------GDVDTLRCSE--RALRGIRGGRIGMIFQEPMVSLNPLHKIGKQ 114

Query: 125 IDEALRIHSILSPAERAEKMYETLDLVGFSKPKKVVNMYPFELSGGMRQRAMIAMALICR 184
           + E L IH  L      +K  E L  VG   P+  +N YP ELSGG RQR MIAMALI  
Sbjct: 115 LVETLAIHRGLRATAAEQKAIEWLGKVGIRHPEIKINAYPHELSGGERQRVMIAMALINE 174

Query: 185 PALLIADEPTTALDVTIQAQILKLLRDLQSRLNMSMLLITHDLGVVANIADEVAVIYQGE 244
           P LLIADEPTTALDV++QAQIL LL+ LQ  L M+ML ITHDL +V  IAD VAV+  G+
Sbjct: 175 PELLIADEPTTALDVSVQAQILDLLKSLQQELGMAMLFITHDLSIVRRIADRVAVMQSGQ 234

Query: 245 IMEAGTVDDIFKAPGHPYLKGLMAAVPHFDMKPGERLKALREIKVDHESLVGKKTAAVNK 304
           ++E      +F AP HPY + L+ A P                        G        
Sbjct: 235 LVETNACHTLFAAPAHPYTQQLINADPR-----------------------GVPVPTAMD 271

Query: 305 TPGPLLTVDNISKTFTTRKSSWFRKSDANATKAVNSVSFEICRGECLGLVGESGSGKTTV 364
            P  LL  + +   F   K  +FR++ A   KAV  +SF + +G+ LGLVGESGSGK+T 
Sbjct: 272 AP-TLLQAEKLRVWFPI-KGGYFRRTQA-YIKAVTDMSFTLAKGQSLGLVGESGSGKSTT 328

Query: 365 SKILMRAVRPDEGSITFHRPEGDIDVLNAKDGDLKELRSKIQMVFQDPISSLSPRMTVGN 424
              +++ +   +G+I F       D+   K  ++   RSK+Q+VFQDP S+L+PRM+V  
Sbjct: 329 GMAILKLL-ASQGAIRF----AGQDLQALKRREMLPYRSKMQVVFQDPYSALNPRMSVAQ 383

Query: 425 ILSEPLEIHGRGDAKYRAEKVRGLVRAIGLGESALNRYPHSFSGGQRQRIGIARALALGP 484
           ++ E L +H + +       +  +++ +GL     +RYP+ FSGGQRQRI IARAL L P
Sbjct: 384 VIGEGLRVHSQLNDDEIDHAICAVMQEVGLDVDTRHRYPNEFSGGQRQRIAIARALVLKP 443

Query: 485 ELLICDEPVSALDVSVQAQILNLLKDLQQDLGLTYLFISHNLAVVDYMADRVAVMCEGRI 544
           E ++ DEP S+LD +VQAQ+L+LLKDLQQ   LTYLFISH+LAV+  +     VM  G I
Sbjct: 444 EFILLDEPTSSLDRTVQAQVLDLLKDLQQKYQLTYLFISHDLAVIRALCHHTIVMKAGEI 503

Query: 545 VELAPREILMRSPIHPYTKSLL 566
           VE    + L  +P HPYT+ L+
Sbjct: 504 VEHGETQSLFENPSHPYTQQLV 525



 Score =  186 bits (473), Expect = 2e-51
 Identities = 117/270 (43%), Positives = 156/270 (57%), Gaps = 21/270 (7%)

Query: 309 LLTVDNISKTFTTRKSSWFRKSDANATKAVNSVSFEICRGECLGLVGESGSGKTTVSKIL 368
           +L +DN+S  F              A      VS  I RGE L LVGESGSGK+  +  +
Sbjct: 5   VLKIDNLSVGFGIA---------GQARPVTEGVSLTIARGETLALVGESGSGKSVTANAI 55

Query: 369 MRAVRPDE-----GSITFHRPEGDIDVLNAKDGDLKELRS-KIQMVFQDPISSLSPRMTV 422
           +R +         GSI F    GD+D L   +  L+ +R  +I M+FQ+P+ SL+P   +
Sbjct: 56  LRLLPKGSAHYLSGSIHF----GDVDTLRCSERALRGIRGGRIGMIFQEPMVSLNPLHKI 111

Query: 423 GNILSEPLEIHGRGDAKYRAEKVRGLVRAIGLG--ESALNRYPHSFSGGQRQRIGIARAL 480
           G  L E L IH    A    +K    +  +G+   E  +N YPH  SGG+RQR+ IA AL
Sbjct: 112 GKQLVETLAIHRGLRATAAEQKAIEWLGKVGIRHPEIKINAYPHELSGGERQRVMIAMAL 171

Query: 481 ALGPELLICDEPVSALDVSVQAQILNLLKDLQQDLGLTYLFISHNLAVVDYMADRVAVMC 540
              PELLI DEP +ALDVSVQAQIL+LLK LQQ+LG+  LFI+H+L++V  +ADRVAVM 
Sbjct: 172 INEPELLIADEPTTALDVSVQAQILDLLKSLQQELGMAMLFITHDLSIVRRIADRVAVMQ 231

Query: 541 EGRIVELAPREILMRSPIHPYTKSLLAAVP 570
            G++VE      L  +P HPYT+ L+ A P
Sbjct: 232 SGQLVETNACHTLFAAPAHPYTQQLINADP 261