Pairwise Alignments

Query, 308 a.a., transcriptional regulator, LysR family from Agrobacterium fabrum C58

Subject, 303 a.a., DNA-binding transcriptional activator GcvA (RefSeq) from Shewanella amazonensis SB2B

 Score =  186 bits (471), Expect = 8e-52
 Identities = 112/288 (38%), Positives = 164/288 (56%), Gaps = 3/288 (1%)

Query: 7   RFLPSLSLLAAFEAASRTGSVTAAARELGLTQGAVSRQILALEEQLGVALFLRERQTIRL 66
           R LP L+ + AFEAA+R  S T AA EL +TQ AVS QI ALE+ LG+ LF R+ +++ L
Sbjct: 3   RRLPPLNAVKAFEAAARHLSFTRAAEELFVTQAAVSHQIKALEDFLGLKLFRRKNRSLLL 62

Query: 67  TRAGEGYAREIREALRRISTASLNLRANPDGGTLNLGVLPSFGTRWLVPRLPDFIARHPG 126
           T  G+ Y  +I++   ++S A+  L A    G+L + + PSF  +WLVPRL  F  ++P 
Sbjct: 63  TEEGQSYFLDIKDIFTQLSDATDRLLARSAIGSLTVSMSPSFAIQWLVPRLAKFSEKNPD 122

Query: 127 ISVNLLTRSSLFDFRTDTVDAAIHFGLPHWPGTELAFLMHEKVIPVCSPAFKELY-GLSR 185
           I V +    S     TD VD AI++G   WPG     L +E +IPVCSP     +  L  
Sbjct: 123 IDVRIKAVDSEEGSLTDDVDVAIYYGQGSWPGLRADKLRNEVLIPVCSPMLLNGHKPLET 182

Query: 186 PDDLLHVPLLHMTTRPDAWEQWFRSHDVRFDNVH-GMLFDQFTTIAEASSAGVGASLVPS 244
           P DL H  LLH  +R D W+ WFR   V   NV+ G +F   + + +A++ G G +L  S
Sbjct: 183 PADLKHHTLLHDMSRHD-WQAWFRQCGVTDVNVNQGPIFSHSSLVLQAAAHGQGVALGYS 241

Query: 245 FMIEEELRSGRLVSAVAGEVESEEAYYLACMPDRATYPPLESFRRWIV 292
            +   ++++GRLV      + S++AYYL C  + A    + +FR W++
Sbjct: 242 VLARPDIKAGRLVVPFQEVLVSKDAYYLVCQQNHAELGKIVAFREWML 289