Pairwise Alignments

Query, 308 a.a., transcriptional regulator, LysR family from Agrobacterium fabrum C58

Subject, 303 a.a., DNA-binding transcriptional activator GcvA (RefSeq) from Shewanella loihica PV-4

 Score =  193 bits (490), Expect = 5e-54
 Identities = 114/290 (39%), Positives = 169/290 (58%), Gaps = 7/290 (2%)

Query: 7   RFLPSLSLLAAFEAASRTGSVTAAARELGLTQGAVSRQILALEEQLGVALFLRERQTIRL 66
           R LP L+ + AFEAA+R  S T AA EL +TQ AVS QI ALEE LG+ LF R+ +++ L
Sbjct: 3   RRLPPLNAVKAFEAAARHLSFTRAAEELFVTQAAVSHQIKALEEYLGLKLFRRKNRSLLL 62

Query: 67  TRAGEGYAREIREALRRISTASLNLRANPDGGTLNLGVLPSFGTRWLVPRLPDFIARHPG 126
           T  G+GY  +I++   +++ A+  L A    G+L +   PSF  +WLVPRL +F   +P 
Sbjct: 63  TEEGQGYFLDIKDIFVQLADATDRLLARSAIGSLTVSTSPSFAIQWLVPRLANFSENNPD 122

Query: 127 ISVNLLTRSSLFDFRTDTVDAAIHFGLPHWPGTELAFLMHEKVIPVCSPAFKELYG---L 183
           I V +          TD VD AI++G+ +WPG     L +E +IPVCSP    L G   L
Sbjct: 123 IDVRIKAVDDETSSLTDDVDVAIYYGMGNWPGLRADKLRNEVLIPVCSPML--LSGPKPL 180

Query: 184 SRPDDLLHVPLLHMTTRPDAWEQWFRSHDVRFDNVH-GMLFDQFTTIAEASSAGVGASLV 242
           S+P DL H  LLH ++R D W+ WFR   +   NV+ G +F   + + +A++ G G +L 
Sbjct: 181 SQPSDLKHHTLLHDSSRHD-WQAWFRQCGINDINVNQGPIFSHSSLVLQAAAHGQGVALG 239

Query: 243 PSFMIEEELRSGRLVSAVAGEVESEEAYYLACMPDRATYPPLESFRRWIV 292
            S +   ++++GRLV      + S+ AYYL C  + A    + +FR+W++
Sbjct: 240 YSVLARPDIKAGRLVCPFPEVLVSKNAYYLVCQQNHAEIGKIVAFRKWML 289