Pairwise Alignments

Query, 308 a.a., transcriptional regulator, LysR family from Agrobacterium fabrum C58

Subject, 303 a.a., DNA-binding transcriptional activator GcvA (RefSeq) from Shewanella sp. ANA-3

 Score =  189 bits (479), Expect = 9e-53
 Identities = 112/290 (38%), Positives = 170/290 (58%), Gaps = 7/290 (2%)

Query: 7   RFLPSLSLLAAFEAASRTGSVTAAARELGLTQGAVSRQILALEEQLGVALFLRERQTIRL 66
           R LP L+ + AFEAA+R  S T AA EL +TQ AVS QI ALE+ LG+ LF R+ +++ L
Sbjct: 3   RRLPPLNAVKAFEAAARHLSFTRAAEELFVTQAAVSHQIKALEDFLGLKLFRRKNRSLLL 62

Query: 67  TRAGEGYAREIREALRRISTASLNLRANPDGGTLNLGVLPSFGTRWLVPRLPDFIARHPG 126
           T  G+ Y  +I++   +++ A+  L A    G+L + + PSF  +WLVPRL  F  ++P 
Sbjct: 63  TEEGQSYFLDIKDIFTQLADATDRLLARSAIGSLTVSMSPSFAIQWLVPRLSKFSEKNPD 122

Query: 127 ISVNLLTRSSLFDFRTDTVDAAIHFGLPHWPGTELAFLMHEKVIPVCSPAFKELYG---L 183
           I V +    +     TD VD AI++GL +WPG     L +E +IPVCSP    L G   L
Sbjct: 123 IDVRIKAVDTEASSLTDDVDVAIYYGLGNWPGLRADKLRNEVLIPVCSPML--LNGPKPL 180

Query: 184 SRPDDLLHVPLLHMTTRPDAWEQWFRSHDVRFDNVH-GMLFDQFTTIAEASSAGVGASLV 242
           S+P+DL +  LLH  +R D W+ WFR   +   NV+ G +F   + + +A++ G G +L 
Sbjct: 181 SKPEDLKYHTLLHDMSRHD-WQAWFRQCGIHDINVNQGPIFSHSSLVLQAAAHGQGVALG 239

Query: 243 PSFMIEEELRSGRLVSAVAGEVESEEAYYLACMPDRATYPPLESFRRWIV 292
            S +   ++++GRLV      + S++AYYL C  + A    + +FR W++
Sbjct: 240 YSVLARPDIKAGRLVCPFQEVLVSKDAYYLVCQQNHAELGKVVAFREWML 289