Pairwise Alignments

Query, 505 a.a., hypothetical protein from Agrobacterium fabrum C58

Subject, 509 a.a., tripartite tricarboxylate transporter permease from Vibrio cholerae E7946 ATCC 55056

 Score =  374 bits (961), Expect = e-108
 Identities = 196/494 (39%), Positives = 304/494 (61%), Gaps = 7/494 (1%)

Query: 7   LLHGLEVAAQPMNLLYALIGVTLGTAVGVLPGIGPALTVALLLPVTYRLDPAGSLIMFAG 66
           +L GL  A  P NL+  +IG  +GT +G+LPG+GP   +AL++P+TY L+PA  LI+ AG
Sbjct: 5   ILQGLATAVMPTNLMMVMIGCFVGTFIGMLPGLGPISAIALMIPITYGLEPASGLILMAG 64

Query: 67  IYYGGMYGGSTTSILLNTPGESASIVTALEGNKMARKGRGGPALATAAIGSFVAGLIATI 126
           +YYG ++GGST+SIL+N PG S+++VTA +G  MA+KG+ G ALA AA  SF  G ++ I
Sbjct: 65  VYYGAIFGGSTSSILINAPGCSSTVVTAFDGYPMAQKGQAGKALALAAYASFTGGTLSAI 124

Query: 127 ALAFVAPYIVKLALVFGPREYFALMVLAFVTVSSAFGDS-ALRGLTSLFIGFALAIVGID 185
            L F AP + K++L F   +YFALM++    V++  G    ++      +G  L+ VGID
Sbjct: 125 MLLFAAPALAKVSLSFQSSDYFALMLVGLSAVAAFAGKGQVIKAWMMTVLGLMLSTVGID 184

Query: 186 QLTGQTRMSFGIPDLLDGVEVTTLAVAMFAIGETLFIVAQ---GNSGDEKVEAVK-GSVW 241
           +  G  R +FG+ DL+DG     LA+A FA+GETL  + +    NS +E+ +    GS+ 
Sbjct: 185 KGIGVERFTFGLTDLMDGFSFLLLAMATFALGETLMGILKPDADNSANEQEQMKNIGSMK 244

Query: 242 MSAQDWARSWKPWLRGTLIGFPIGAMPAGGAEIGTFLSYATEKKLTKYP--EEFGHGAIE 299
           ++ ++   +    LR +++GF  G +P  GA I  FL+Y  E+ L      EEFG G++ 
Sbjct: 245 LTKEEVKEAAPVSLRSSILGFFTGVLPGAGATIAAFLAYGMERNLAPKAKKEEFGQGSLR 304

Query: 300 GVAGPEAANNASAAGTLVPLLTLGLPTTATAAIMLAGFQQFGLQPGPLLFATNPQLVWGL 359
           G+  PE+ANNA+++G+ VPLLTLG+P + T AIML     +G+QPGP LF  +P + W +
Sbjct: 305 GLVAPESANNAASSGSFVPLLTLGIPGSGTTAIMLGALIAYGIQPGPRLFVDHPDIFWSV 364

Query: 360 IASLFIANLMLLVLNLPLVGLWVKLLTIPKPWLYAGILLFATLGTIGANPSVFELGMLLA 419
           I S+++ N++LL+LNLPL+    KLL +P+  L   IL F+  G    + +  ++ +++ 
Sbjct: 365 IISMYVGNIVLLILNLPLIPYISKLLAVPRTVLLPMILFFSITGVYLVSFNTMDVYVMIL 424

Query: 420 FGILGYIMRIFGYPIAPAVVGLILGPLAEQQLRRALAIGQGDPTVLLTSPIAVGLFIVAA 479
             +    +R+  +P+AP ++G ILG L E+ LRRAL I  G+ + L   PI +   ++A 
Sbjct: 425 VAMGAIALRLANFPLAPLLLGFILGGLMEENLRRALIITDGEISFLWERPITLAFTVLAI 484

Query: 480 AAFIVPLIMRIRGR 493
              + PL  R+  R
Sbjct: 485 VTLLSPLFGRLMER 498