Pairwise Alignments

Query, 314 a.a., hypothetical protein from Agrobacterium fabrum C58

Subject, 323 a.a., tripartite tricarboxylate transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

 Score =  160 bits (404), Expect = 5e-44
 Identities = 92/318 (28%), Positives = 151/318 (47%), Gaps = 5/318 (1%)

Query: 2   KHFLIGTFLAGVIALPAVAADYT---IIAPANPGGGWDQTARSLQTVLQEEGISKSVQVQ 58
           K  L    LA   +  ++AAD      I P   GGGWD TAR+    L +  +  +   Q
Sbjct: 6   KPSLTAAMLAATFSFSSLAADLEKIHFIVPGGAGGGWDMTARATGDALMKAKLVGNASYQ 65

Query: 59  NVPGAGGTIGLAQFASQQKGNPNALIVGGYVMVGAILTNNAPVTLKEVTPIARLTGEYEA 118
           N+ G GG   +A          + L++    +V   L+   P + +++TP+A +  +Y A
Sbjct: 66  NLSGGGGGKAIAHLIETADRQQDTLMINSTPIVIRSLSGVFPQSFRDLTPVAEIVSDYGA 125

Query: 119 IVVPASSPLKTIGDLVDQLKKDPGSVSWGGGSA-GGTDHIAVGLIAKAAGVDPTKINYIA 177
            VV   S   +   +V   K +P  +   GGSA G  DH+      K  G+DP ++ Y+A
Sbjct: 126 FVVAGDSKYTSWEQVVADFKANPKQIKIAGGSARGSMDHLVAAAAFKGQGLDPKEVRYVA 185

Query: 178 YSGGGEALASILGSQVTAGISSYGEFESQVKAGTLRLLAVSSEEKLD-GVDAPTLKESGL 236
           Y  GG A+ ++L  +     +  GE     K+G +R+LA++S ++LD   D PTL + G 
Sbjct: 186 YDAGGSAMTALLSGETQVLSTGLGEVLEMSKSGQVRVLAITSPKRLDIAPDIPTLADYGN 245

Query: 237 DVVVQNWRMVAAPPGLTPEQEKAVNADIEKLVKSAKWQETLKTKSWMDTYLAGDEFKAQL 296
                NWR   A PG++ E+    N   +K+  S +W+       W+D+Y    EF A L
Sbjct: 246 PTTFVNWRGYFAAPGVSAEKVAEWNEVFKKMFASEEWKVIRDRNGWIDSYKGDKEFYAFL 305

Query: 297 AKDTDATAAILKDIGLVK 314
            +       +++++G +K
Sbjct: 306 EEQEKQMGDLMRELGFLK 323