Pairwise Alignments

Query, 300 a.a., RNA polymerase sigma-32 factor from Agrobacterium fabrum C58

Subject, 335 a.a., RNA polymerase sigma factor RpoS from Vibrio cholerae E7946 ATCC 55056

 Score =  140 bits (354), Expect = 3e-38
 Identities = 93/273 (34%), Positives = 150/273 (54%), Gaps = 13/273 (4%)

Query: 19  YLDEIRKFPMLEPQEEYMLGKRYAEHGDRDAAHKLVTSHLRLVAKIAMGYRGYGLPIGEV 78
           YL EI   P+L  +EE +  +R A  GD  A  +++ S+LRLV KI+  Y   GL + ++
Sbjct: 62  YLSEIGFSPLLTAEEEVLYARR-ALRGDEAARKRMIESNLRLVVKISRRYSNRGLALLDL 120

Query: 79  VSEGNVGLMQAVKKFDPERGFRLATYAMWWIKASIQEYILRSWSLVKMGTTANQKRLFFN 138
           + EGN+GL++AV+KFDPERGFR +TYA WWI+ +I+  ++     +++      K L   
Sbjct: 121 IEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIRLPIHV-VKELNIY 179

Query: 139 LRRLKGRIQAIDDGDLKPEHVKEIATKLQVSEEEVISMNRRLHGDASLNAPIKASEGESG 198
           LR  +   Q +D  +  PE   EIA +L    ++V  M R     +S++ PI   +G+  
Sbjct: 180 LRTARELSQRLDH-EPTPE---EIALELDRPVDDVTKMLRLNERISSVDTPI-GGDGDKA 234

Query: 199 QWQDWLVDDHESQEAVLIEQDELETRRRMLAKAMGVLNERERRIFEAR--RLAEDPVTLE 256
              D L D H +      + D++   R  L   +  LN +++ +   R   L  +P TLE
Sbjct: 235 -LLDILPDSHNADPEFSTQDDDI---RESLLNWLDELNPKQKEVLARRFGLLGYEPSTLE 290

Query: 257 ELSSEFDISRERVRQIEVRAFEKVQEAVQKEAL 289
           E+  E +++RERVRQI+V    +++E + K+ L
Sbjct: 291 EVGREINLTRERVRQIQVEGLRRLREILVKQGL 323