Pairwise Alignments

Query, 300 a.a., RNA polymerase sigma-32 factor from Agrobacterium fabrum C58

Subject, 399 a.a., RNA polymerase sigma factor RpoD from Synechococcus elongatus PCC 7942

 Score =  109 bits (272), Expect = 1e-28
 Identities = 72/246 (29%), Positives = 128/246 (52%), Gaps = 13/246 (5%)

Query: 47  RDAAHKLVTSHLRLVAKIAMGYRGYGLPIGEVVSEGNVGLMQAVKKFDPERGFRLATYAM 106
           R A  K+V S+LRLV  IA  Y   GL   +++ EG++GL++A +KFD E+G++ +TYA 
Sbjct: 161 RRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYAT 220

Query: 107 WWIKASIQEYILRSWSLVKMGTTANQKRLFFNLRRLKGRIQAIDDGDLKPEHVKEIATKL 166
           WWI+ +I   I      +++        L+  + R+K   + +     +    +EIAT++
Sbjct: 221 WWIRQAITRAIADQSRTIRLPV-----HLYETISRIKKTTKLLSQEMGRKPTEEEIATRM 275

Query: 167 QVSEEEVISMNRRLHGDASLNAPIKASEGESGQWQDWLVDDHESQEAVLIEQDELETRRR 226
           +++ E++  + +      SL  PI   + E  +  D++  D E+ E    ++      R 
Sbjct: 276 EMTIEKLRFIAKSAQLPISLETPI--GKEEDSRLGDFIEADGETPE----DEVAKNLLRE 329

Query: 227 MLAKAMGVLNERERRIFEARRLAED--PVTLEELSSEFDISRERVRQIEVRAFEKVQEAV 284
            L   +  L+ RER +   R   +D    TLEE+   F+++RER+RQIE +A  K++   
Sbjct: 330 DLEGVLSTLSPRERDVLRLRYGLDDGRMKTLEEIGQLFNVTRERIRQIEAKALRKLRHPN 389

Query: 285 QKEALE 290
           +   L+
Sbjct: 390 RNSILK 395