Pairwise Alignments

Query, 340 a.a., ribosomal large subunit pseudouridine synthase, RluD subfamily from Agrobacterium fabrum C58

Subject, 323 a.a., RluA family pseudouridine synthase (RefSeq) from Shewanella loihica PV-4

 Score =  228 bits (581), Expect = 2e-64
 Identities = 140/311 (45%), Positives = 182/311 (58%), Gaps = 22/311 (7%)

Query: 30  VGEVGSDLSRSRLKALIEQGAVLLNGQPVTEPKKKVHPGDRVEIVMPEPEDPVPQGEDIP 89
           + E+  D SR+R+K  I+ GAV ++G   T+P++KV  G  +EI     E+   + + I 
Sbjct: 24  LAELFPDYSRTRIKEWIQAGAVYVDGMVQTKPREKVLEGQEIEIEATLKEEIKAEAQAID 83

Query: 90  LDVEYEDEDLIVLVKPAGLVVHPGAGNWTGTLVNALIYHCGDSLSGIGGVKRPGIVHRLD 149
           LD+ YED+ +IV+ K AGLVVHPGAGN  GTL+NAL++HC +    I  V R GIVHRLD
Sbjct: 84  LDIVYEDDHIIVINKQAGLVVHPGAGNSDGTLMNALLHHCPE----IELVPRAGIVHRLD 139

Query: 150 KETSGVMVVAKNDNAHRHLAAQFADHGRTGPLERAYKAVVWGRPRTLRGTVDAALGR-GT 208
           K+T+G+MVVAK   A  HL A      +   + R Y+A+V G   T  G VD  + R  T
Sbjct: 140 KDTTGLMVVAKTVEAQTHLVAAL----QAREITREYEAIVSG-TMTAGGVVDEPIARHPT 194

Query: 209 DRTKRAVKNEDSFDAREAITHYEVMERFHEKPDASCLASMVECRLETGRTHQIRVHMAHI 268
            RT  AV +      R ++THY V E+F          + +  RLETGRTHQIRVHMAHI
Sbjct: 195 KRTHMAVHH----SGRPSVTHYRVAEKFRAH-------TRLRLRLETGRTHQIRVHMAHI 243

Query: 269 GHPLIGDPEYGAAFRTKANLLDEPARSTVNRFPRQALHAYLLAFEHPRTGEVMEFETDMP 328
           GH L+GDP YG   R       E     +N F RQALHA  L   HP T E+M ++  +P
Sbjct: 244 GHILVGDPVYGGRPRPPKKATPE-LMEALNGFKRQALHAVRLELAHPFTCEIMSWQAPIP 302

Query: 329 EDMEELVTALR 339
           EDM  L  ALR
Sbjct: 303 EDMVALTRALR 313