Pairwise Alignments

Query, 340 a.a., ribosomal large subunit pseudouridine synthase, RluD subfamily from Agrobacterium fabrum C58

Subject, 370 a.a., ribosomal large subunit pseudouridine synthase D from Herbaspirillum seropedicae SmR1

 Score =  206 bits (523), Expect = 1e-57
 Identities = 136/317 (42%), Positives = 178/317 (56%), Gaps = 37/317 (11%)

Query: 24  RIDVWLVGEVGSDLSRSRLKALIEQGAVLLNGQPVTEPKKKVHPGDRVEIVMPE--PEDP 81
           R+D  L G +  + SRSR++  IE G V +NG P     K    GD +  V P+  P D 
Sbjct: 54  RLDKVLSGLL-PEFSRSRIQQWIEDGHVTVNGAPAKA--KMTMLGDELVEVAPQSVPSDQ 110

Query: 82  VPQGEDIPLDVEYEDEDLIVLVKPAGLVVHPGAGNWTGTLVNALIYHCGDSLSGIGGVKR 141
               E + LD+ +ED+ LIVL KPAGLVVHP AGNW+GTL+N L++HC      +  V R
Sbjct: 111 PYGPEPMALDILHEDKALIVLNKPAGLVVHPAAGNWSGTLLNGLLHHC----PALAKVPR 166

Query: 142 PGIVHRLDKETSGVMVVAKNDNAHRHLAAQFADHGRTGPLERAYKAVVWGRPRTLRGTVD 201
            GIVHRLDK+TSG+MVVAK   A   L  Q     +   ++R Y A+VWG P+ L GT++
Sbjct: 167 AGIVHRLDKDTSGIMVVAKTLAAQTDLVRQL----QARSMKRQYLALVWGLPQ-LSGTIN 221

Query: 202 AALGR-GTDRTKRAVKNEDSFDAREAITHYEVME--RFHEKPDASCLASMVECRLETGRT 258
           A + R   DR K AV    S  A+ A+THY  +       KP      S++ CRLETGRT
Sbjct: 222 APMARHPRDRIKMAV--SQSMRAKPAVTHYRRLATGEIDRKP-----VSLIHCRLETGRT 274

Query: 259 HQIRVHMAHIGHPLIGDPEYGAAFRTKANLLDEPARSTVNRFPRQALHAYLLAFEHPRTG 318
           HQIRVH+  +G PL+GD  YG                 V+ FPRQAL A  L   HP TG
Sbjct: 275 HQIRVHLQSLGFPLVGDALYG-------------KHHLVSVFPRQALLAGRLGLLHPSTG 321

Query: 319 EVMEFETDMPEDMEELV 335
           +  ++   +PED+  L+
Sbjct: 322 KFRQWAAPLPEDIVALL 338