Pairwise Alignments

Query, 340 a.a., ribosomal large subunit pseudouridine synthase, RluD subfamily from Agrobacterium fabrum C58

Subject, 342 a.a., ribosomal large subunit pseudouridine synthase D from Caulobacter crescentus NA1000

 Score =  264 bits (675), Expect = 2e-75
 Identities = 154/309 (49%), Positives = 189/309 (61%), Gaps = 25/309 (8%)

Query: 36  DLSRSRLKALIEQGAVLLNGQPVTEPKKKVHPGDRVEIVMPEPEDPVPQGEDIPLDVEYE 95
           DLSR+RL+ALI +G +  +G+ V +  +K   G    +V+P P    P+ E +PL + YE
Sbjct: 50  DLSRARLQALIAEGRLTFDGETVADASRKARAGV-YSLVVPPPAPADPEPEALPLSILYE 108

Query: 96  DEDLIVLVKPAGLVVHPGAGNWTGTLVNALIYHCGDSLSGIGGVKRPGIVHRLDKETSGV 155
           D  LIV+ K AG+ VHP  G + GTLVNAL++HCG SLSG+GGV RPGIVHRLDK+TSGV
Sbjct: 109 DAHLIVVDKAAGMAVHPAPGTYNGTLVNALLHHCGASLSGVGGVARPGIVHRLDKDTSGV 168

Query: 156 MVVAKNDNAHRHLAAQFADHGRTGPLERAYKAVVWGRPRTLRGTVDAALGRGT-DRTKRA 214
           MV AK+D AHR L+  FA H     ++R Y A+  G P    GT+   +GR   DR K A
Sbjct: 169 MVAAKSDAAHRGLSTLFATH----DIDRLYVALTRGAPNPPTGTIQTQIGRSPGDRKKMA 224

Query: 215 VKNEDSFDAREAITHYEVMERFHEKPDASCLASMVECRLETGRTHQIRVHMAHIGHPLIG 274
           V        REAITHY V   F   P    LA+ V CRLETGRTHQIRVHMA  G P +G
Sbjct: 225 VLRA---GGREAITHYRVEAAF--GPADRPLAARVACRLETGRTHQIRVHMASKGSPCLG 279

Query: 275 DPEYGAAFRTKANLLDEPARSTVNRFP-----RQALHAYLLAFEHPRTGEVMEFETDMPE 329
           DP YGAA         +PA +   R       RQALHA +L F HP TGE + FET +P 
Sbjct: 280 DPVYGAA---------QPAAAVRERIEAAGLRRQALHAAVLGFVHPITGETLRFETPLPA 330

Query: 330 DMEELVTAL 338
           DM+ L  AL
Sbjct: 331 DMDALEVAL 339