Pairwise Alignments

Query, 340 a.a., ribosomal large subunit pseudouridine synthase, RluD subfamily from Agrobacterium fabrum C58

Subject, 323 a.a., ribosomal large subunit pseudouridine synthase D (RefSeq) from Shewanella sp. ANA-3

 Score =  218 bits (555), Expect = 2e-61
 Identities = 139/312 (44%), Positives = 180/312 (57%), Gaps = 24/312 (7%)

Query: 30  VGEVGSDLSRSRLKALIEQGAVLLNGQPVTEPKKKVHPGDRVEIVMPEPEDPVPQGEDIP 89
           + E+  D SR+R+K  I   AV ++G  V +P++KV    R+EI     E+     + I 
Sbjct: 24  LAELFPDYSRTRIKEWILSDAVYVDGVIVNKPREKVFELQRIEINATLEEEVHAAAQAIE 83

Query: 90  LDVEYEDEDLIVLVKPAGLVVHPGAGNWTGTLVNALIYHCGDSLSGIGGVKRPGIVHRLD 149
           LD+ YED+D++V+ K AGLVVHPGAGN  GTL+NAL++HC      I  V R GIVHRLD
Sbjct: 84  LDIVYEDDDILVINKQAGLVVHPGAGNADGTLMNALLHHC----PNIEHVPRAGIVHRLD 139

Query: 150 KETSGVMVVAKNDNAHRHLAAQFADHGRTGPLERAYKAVVWGRPRTLRGTVDAALGR-GT 208
           K+T+G+MVVAK   A  HL A      +   + R Y+A+V G   T  GTVD  +GR  T
Sbjct: 140 KDTTGLMVVAKTVEAQTHLVAAL----QAREITREYEAIVLG-TMTAGGTVDEPIGRHPT 194

Query: 209 DRTKRAVKNEDSFDAREAITHYEVMERFHEKPDASCLASMVECRLETGRTHQIRVHMAHI 268
            RT  AV +      + A+THY V E+F          + +  RLE+GRTHQIRVHMA+I
Sbjct: 195 KRTHMAVHH----SGKPAVTHYRVAEKFRNH-------TRLRLRLESGRTHQIRVHMAYI 243

Query: 269 GHPLIGDPEYGAAFRTKANLLDEPA-RSTVNRFPRQALHAYLLAFEHPRTGEVMEFETDM 327
           GH L+GDP YG   R K      P     +  F RQALHA  L   HP T E+M +   +
Sbjct: 244 GHVLVGDPVYGG--RPKPPKAASPEFFEILKNFKRQALHAVRLELAHPVTCEIMSWTAPI 301

Query: 328 PEDMEELVTALR 339
           PEDM  L  ALR
Sbjct: 302 PEDMVILTKALR 313