Pairwise Alignments

Query, 300 a.a., ABC transporter, membrane spanning protein from Agrobacterium fabrum C58

Subject, 307 a.a., ABC transporter for L-leucine/L-phenylalanine/D-alanine, permease component 1 LivH (from data) from Pseudomonas fluorescens FW300-N2E2

 Score =  300 bits (769), Expect = 2e-86
 Identities = 156/304 (51%), Positives = 218/304 (71%), Gaps = 8/304 (2%)

Query: 3   YFIQQLINGLTLGSIYGLIAIGYTMVYGIIGMINFAHGDIFMLGGFAALIVFLIATSFFA 62
           +F QQL+NGLT+GS Y LIAIGYTMVYGIIGMINFAHG+++M+G + A I   IA     
Sbjct: 6   HFFQQLVNGLTVGSTYALIAIGYTMVYGIIGMINFAHGEVYMIGSYVAFIA--IAGLAMM 63

Query: 63  GIP-VALLLLLMMIVAMLMTGLWNWVIERVAYRPLRGSFRLAPLITAIGMSIALSNFIQV 121
           G+  V LL+    I ++++T  + + IER+AYRPLRGS RL PLI+AIGMSI L N + +
Sbjct: 64  GLDSVPLLMTAAFIASIVVTSSYGYSIERIAYRPLRGSNRLIPLISAIGMSIFLQNTVLL 123

Query: 122 TQGPRNKPIPSMVTESYHFGA-----ITVSLKQLIIMVVTSVLLFAFWYIVNKTPLGRAQ 176
           +Q  ++K IP+++  ++  G      + +S  Q+++ VVT V +      ++++ LGRA 
Sbjct: 124 SQDSKDKSIPNLIPGNFAIGPGGAHEVLISYMQIVVFVVTLVAMLGLTLFISRSRLGRAC 183

Query: 177 RATEQDRKMAALLGVDVDKTISITFIMGAALAAVAGTMYLMYYGVASFSDGFVPGVKAFT 236
           RA  +D KMA LLG++ +  I++TF++GAALAA+A  +  M YGV + + GF+ G+KAFT
Sbjct: 184 RACAEDIKMANLLGINTNNIIALTFVIGAALAAIAAVLLSMQYGVINPNAGFLVGLKAFT 243

Query: 237 AAVLGGIGSLPGAVLGGLLIGLIESLWSAYFSIAYKDVAAFGILAFVLIFKPTGILGRPE 296
           AAVLGGIGS+PGA+LGGL++G+ E+  +  F   YKDV AFG+L  VL+F+PTGILGRPE
Sbjct: 244 AAVLGGIGSIPGAMLGGLVLGVAEAFGADIFGDQYKDVVAFGLLVLVLLFRPTGILGRPE 303

Query: 297 VEKV 300
           VEKV
Sbjct: 304 VEKV 307