Pairwise Alignments

Query, 300 a.a., ABC transporter, membrane spanning protein from Agrobacterium fabrum C58

Subject, 307 a.a., branched-chain amino acid transporter permease subunit LivH from Pseudomonas fluorescens FW300-N2C3

 Score =  300 bits (768), Expect = 3e-86
 Identities = 153/303 (50%), Positives = 216/303 (71%), Gaps = 6/303 (1%)

Query: 3   YFIQQLINGLTLGSIYGLIAIGYTMVYGIIGMINFAHGDIFMLGGFAALIVFLIATSFFA 62
           +F QQL+NGLT+GS Y LIAIGYTMVYGIIGMINFAHG+++M+G + A I  +   S   
Sbjct: 6   HFFQQLVNGLTVGSTYALIAIGYTMVYGIIGMINFAHGEVYMIGSYVAFIA-IAGLSMMG 64

Query: 63  GIPVALLLLLMMIVAMLMTGLWNWVIERVAYRPLRGSFRLAPLITAIGMSIALSNFIQVT 122
              V LL+    + ++++T  + + IER+AYRPLRGS RL PLI+AIGMSI L N + ++
Sbjct: 65  LDSVPLLMTAAFLASIVVTSSYGYSIERIAYRPLRGSNRLIPLISAIGMSIFLQNTVLLS 124

Query: 123 QGPRNKPIPSMVTESYHFGA-----ITVSLKQLIIMVVTSVLLFAFWYIVNKTPLGRAQR 177
           Q  ++K IP+++  ++  G      + +S  Q+++ VVT V +      ++++ LGRA R
Sbjct: 125 QDSKDKSIPNLIPGNFAIGPGGAHEVLISYMQIVVFVVTLVAMLGLTLFISRSRLGRACR 184

Query: 178 ATEQDRKMAALLGVDVDKTISITFIMGAALAAVAGTMYLMYYGVASFSDGFVPGVKAFTA 237
           A  +D KMA LLG++ +  I++TF++GAALAA+A  +  M YGV + + GF+ G+KAFTA
Sbjct: 185 ACAEDIKMANLLGINTNNIIALTFVIGAALAAIAAVLLSMQYGVINPNAGFLVGLKAFTA 244

Query: 238 AVLGGIGSLPGAVLGGLLIGLIESLWSAYFSIAYKDVAAFGILAFVLIFKPTGILGRPEV 297
           AVLGGIGS+PGA+LGGL++G+ E+  +  F   YKDV AFG+L  VL+F+PTGILGRPEV
Sbjct: 245 AVLGGIGSIPGAMLGGLVLGVAEAFGADIFGDQYKDVVAFGLLVLVLLFRPTGILGRPEV 304

Query: 298 EKV 300
           EKV
Sbjct: 305 EKV 307